GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-26 06:35:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRVU05_CCNN15173_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN15173.g1, mRNA sequence.
FG847492.1:374-393
CCTCGTGGATTATCATCCTTCCAATCATCC374CAAGCCCTTGCTTTCTCTTGTGCTGCATCGTCATCTTCATCATCGTCTTC
vsu-ars_004033_LI10Contig_10961 VSU-ARS-L10 Phaseolus acutifolius cDNA, mRNA sequence.
HO779000.1:1571-1590
CCAGGCATACCGATAGACTGAGCCAAAACC1571CAAGCCCTTGCTTTCTCTTGTGCTGCATCATCGTCATCTTCCTCATCGTC
vsu-ars_004234_LI10Contig_6379 VSU-ARS-L10 Phaseolus acutifolius cDNA, mRNA sequence.
HO779201.1:297-316
CCTCGTGGATTATCATCCTTCCAGTCATCC297CAAGCCCTTGCTTTCTCTTGTGCTGCATCATCGTCATCTTCCTCATCGTC
Vigna angularis mRNA, clone: VES03O22.
HX943564.1:203-222
CCTCGTGGATTATCATCCTTCCAGTCATCC203CAAGCCCTTGCTTTCTCTTGTGCTGCATCGTCATCTTCATCATCATCATC
Vigna angularis mRNA, clone: VES21E12.
HX950104.1:217-236
CCTCGGGGATTATCATCCTTCCAGTCATCC217CAAGCCCTTGCTTTCTCTTGGGCTGCATCGTCATCTTCATCATCATCATC
Vigna unguiculata cultivar Xiabao 2 chromosome Vu09.
CP039355.1:38367607-38367626
CCTCGTGGATTATCATCCTTCCAATCATCC38367607CAAGCCCTTGCTTTCTCTTGTGCTGCATCGTCATCTTCATCATCGTCTTC
Chrysolina americana genome assembly, chromosome: 5.
OY293414.1:65649715-65649734
AGCAGCATCTCTGGTGGTTGTTGTCGAAAT65649715CAAGCCCTTGCTTTCTCTTGTCCAGCCAAAGGTGGTCTGGTCTTTCTTCC
Rattus norvegicus 20 BAC CH230-186I2 (Children's Hospital Oakland Research Institute) complete sequence.
AC125688.6:119489-119508
AATAATAATTAAAGAAAAAGAAACTGAATT119489CAAGAGAAAGCAAGGGCTTGGGGTTGGAGGGAATAAAGACAAGAGGGGGA
Carassius carassius genome assembly, chromosome: 4.
OY720471.1:15006746-15006765
ATCACAGTTCTGTATAAACATTTGACTTAG15006746CAAGAGAAAGCAAGGGCTTGGCTGTCATGCTATTCTAGCGAGACTTTTTT
07VANA7_T7_037_F07_28FEB2006_053 07VANA7 Phaseolus vulgaris cDNA, mRNA sequence.
FD791174.1:354-373
GACGATGAGGAAGATGACGATGATGCAGCA354CAAGAGAAAGCAAGGGCTTGGGATGACTGGAAGGATGATAATCCACGAGG
Pv040B_M13R_C05.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE705078.1:697-716
GACGATGAGGAAGATGACGACGATGCAGCA697CAAGAGAAAGCAAGGGCTTGGGATGACTGGAAGGATGATAATCCACGAGG
MOOFP28TR MOO Vigna unguiculata cDNA 3', mRNA sequence.
FF394775.1:213-232
GAAGACGATGATGAAGATGACGATGCAGCA213CAAGAGAAAGCAAGGGCTTGGGATGATTGGAAGGATGATAATCCACGAGG
MOOFP28TF MOO Vigna unguiculata cDNA 5', mRNA sequence.
FF401727.1:213-232
GAAGACGATGATGAAGATGACGATGCAGCA213CAAGAGAAAGCAAGGGCTTGGGATGATTGGAAGGATGATAATCCACGAGG
MOOFR35TF MOO Vigna unguiculata cDNA 5', mRNA sequence.
FF402866.1:376-395
GAAGACGATGATGAAGATGACGATGCAGCA376CAAGAGAAAGCAAGGGCTTGGGATGATTGGAAGGATGATAATCCACGAGG
vsu-ars_025491_LI15contig_15569 VSU-ARS-L15 Phaseolus acutifolius cDNA, mRNA sequence.
HO800458.1:490-509
GACGATGAGGAAGATGACGATGATGCAGCA490CAAGAGAAAGCAAGGGCTTGGGATGACTGGAAGGATGATAATCCACGAGG
Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
AP015035.1:15067964-15067983
GATGATGATGATGAAGATGACGATGCAGCA15067964CAAGAGAAAGCAAGGGCTTGGGATGACTGGAAGGATGATAATCCACGAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAGCCCTTGCTTTCTCTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGCCCTTGCTTTCTCTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.634 | 0.625 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGCCCTTGCTTTCTCTTG&k=0&no_gap=0&offset=0&limit=50
1.173 | 0.539 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGAGAAAGCAAGGGCTTG&k=0&no_gap=0&offset=0&limit=43
1.179 | 0.006 | cgi_end;

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