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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:40:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica napus genome assembly, chromosome: A08.
HG994362.1:11933332-11933351
AAAGAATGCTGGAAAACAGATATTACTTCT11933332CAAGTAACAATTGGCGATTCAATTATTGATAAAGAAGACAAAACACACAA
Brassica rapa genome, scaffold: A08.
LR031575.1:10951555-10951574
ATTCGAAAGATTGCTGGAAAACATACTTCT10951555CAAGTAACAATTGGCGATTCAATTATTGATAAAGAAGACAAAACACACAA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:17881004-17881023
AAAGAATGCTGGAAAACAGATATTACTTCT17881004CAAGTAACAATTGGCGATTCAATTATTGATAAAGAAGACAAAACACACAA
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:16760142-16760161
ATTCGAAAGATTGCTGGAAAACATACTTCT16760142CAAGTAACAATTGGCGATTCAATTATTGATAAAGAAGACAAAACACACAA
58-E010651-021-004-C16-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022C164Q, mRNA sequence.
CX191056.1:425-444
TTGTGTGTTTTGTCTTCTTTATCAATAATT425GAATCGCCAATTGTTACTTGAGAAGT
27-E023032-021-019-F07-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022F0719Q, mRNA sequence.
CX193892.1:396-415
TTGTGTGTTTTGTCTTCTTTATCAATAATT396GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGCANAAAAA
07-E010487-021-001-N02-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022N021Q, mRNA sequence.
CX195671.1:286-305
TTGTGTGTTTTGTCTTCTTTATCAATAATT286GAATCGCCAATTGTTACTTGAG
Brassica oleracea var. viridis mRNA, clone: KALE-103J03, 3' end sequence.
DK554742.1:781-800
TTGTGTGTTTTGTCTTCTTTATCAATAATT781GAATCGCCAATTGTTACTTGAG
Brassica oleracea var. viridis mRNA, clone: KALE-111H18, 3' end sequence.
DK557761.1:793-812
TTGTGTGTTTTGTCTTCTTTATCAATAATT793GAATCGCCAATTGTTACTTGAG
Brassica oleracea var. viridis mRNA, clone: KALE-140F01, 3' end sequence.
DK568766.1:740-759
TTGTGTGTTTTGTCTTCTTTATCAATAATT740GAATCGCCAATTGTTACTTGAC
Brassica oleracea var. viridis mRNA, clone: KALE-140F24, 3' end sequence.
DK568789.1:699-718
TTGTGTGTTTTGTCTTCTTTATCAATAATT699GAATCGCCAATTGTTACTTGAC
0138907 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149394.1:172-191
TTGTGTGTTTTGTCTTCTTTATCAATAATT172GAATCGCCAATTGTTACTTGAGAAAAAAAAAAAAAAAGGGCGGCCGCTCT
0139542 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149717.1:172-191
TTGTGTGTTTTGTCTTCTTTATCAATAATT172GAATCGCCAATTGTTACTTGAGAAAAAAAAAAAAAAAGGGCGGCCGCTCT
0140991 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV151069.1:697-716
TTGTGTGTTTTGTCTTCTTTATCAATAATT697GAATCGCCAATTGTTACTTGAGAAGTAAAAAAAAAAAAAA
BR023972 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-064D10 5', mRNA sequence.
EX039328.1:322-341
TTGTGTGTTTTGTCTTCTTTATCAATAATT322GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGC
BR026141 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-091H05 5', mRNA sequence.
EX041497.1:375-394
TTGTGTGTTTTGTCTTCTTTATCAATAATT375GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGCA
BR026243 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-093B09 5', mRNA sequence.
EX041599.1:356-375
TTGTGTGTTTTGTCTTCTTTATCAATAATT356GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGCATTCTTT
BR033757 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-042E09 5', mRNA sequence.
EX049113.1:435-454
TTGTGTGTTTTGTCTTCTTTATCAATAATT435GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGCATTCTTT
BR035369 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-063H01 5', mRNA sequence.
EX050725.1:435-454
TTGTGTGTTTTGTCTTCTTTATCAATAATT435GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGCATTCTTT
BR035802 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-069F03 5', mRNA sequence.
EX051158.1:435-454
TTGTGTGTTTTGTCTTCTTTATCAATAATT435GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGCATTCTTT
BR035968 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-071G07 5', mRNA sequence.
EX051324.1:435-454
TTGTGTGTTTTGTCTTCTTTATCAATAATT435GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGCATTCTTT
BR036077 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-073C11 5', mRNA sequence.
EX051433.1:435-454
TTGTGTGTTTTGTCTTCTTTATCAATAATT435GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGCATTCTTT
BR075288 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-056B03 5', mRNA sequence.
EX088998.1:214-233
TTGTGTGTTTTGTCTTCTTTATCAATAATT214GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGCAAAAAAA
KBrB028O19R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB028O19, genomic survey sequence.
DX031949.1:259-278
TTGTGTGTTTTGTCTTCTTTATCAATAATT259GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGCATTCTTT
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:14275778-14275797
TTGTGTGTTTTGTCTTCTTTATCAATAATT14275778GAATCGCCAATTGTTACTTGAGAAGTATGTTTTCCAGCAATCTTTCGAAT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:34260923-34260942
TTGTGTGTTTTGTCTTCTTTATCAATAATT34260923GAATCGCCAATTGTTACTTGAGAAGTAATATCTGTTTTCCAGCATTCTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAAGTAACAATTGGCGATTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGTAACAATTGGCGATTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGTAACAATTGGCGATTC&k=0&no_gap=0&offset=0&limit=50
1.365 | 1.254 | search_minus_done; http://172.18.8.135:50400/match?q=GAATCGCCAATTGTTACTTG&k=0&no_gap=0&offset=0&limit=46
1.380 | 0.015 | cgi_end;

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