GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:22:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pipistrellus pygmaeus genome assembly, chromosome: 1.
OX465302.1:18228199-18228218
GAGATGACTACTGTTTCCTATAAAAGCTGG18228199CAAGTGCCACTCCAAAAAGGAACAATTCTGGGATGTGGAAAGGAGGTAGA
Myripristis murdjan genome assembly, chromosome: 14.
LR597563.1:34039213-34039232
TCGATGTACAGTCCGGGCCAGCGTTGCGTT34039213CAAGTGCCACTCCAAAAAGGAGGACAAATAAGCGTCCGGCTTGGCATTTA
Scyliorhinus canicula genome assembly, chromosome: 4.
LR744033.1:10293830-10293849
GGCAGCAGTACATATCAACACCATCGCCTG10293830CAAGTGCCACTCCAAAAAGGCACTCACCATCCTGACTTTAAAATATATCT
Ormia ochracea genome assembly, chromosome: 2.
OY727106.1:52105649-52105668
TTAGTAAAGAAGGCCATCTTTAAATGTGTG52105649CAAGTGCCACTCCAAAAAGGAAATCACCATTTTCATTAAAAATCCCTTTT
Pipistrellus pipistrellus genome assembly, chromosome: 1.
LR862356.1:187787635-187787654
TCTACCTCCTTTCCACATCCCAGAATTGTT187787635CCTTTTTGGAGTGGCACTTGCCAGCTTTTATAGGAAACATTAGTCATCTC
Daucus carota subsp. sativus cultivar DH1 chromosome 7.
CP093349.1:38991652-38991671
ATGATATAATGTCTGAATGTGCCTAAAGTG38991652CCTTTTTGGAGTGGCACTTGATATAGAAGGAATGTAATAAAATGCCATTG
Daucus carota isolate Kuroda chromosome 7.
CP125307.1:39054630-39054649
ATGATATAATGTCTGAATGTGCCTAAAGTG39054630CCTTTTTGGAGTGGCACTTGATATAGAAGGAATGTAATAAAATGCCATTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAGTGCCACTCCAAAAAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGTGCCACTCCAAAAAGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.111 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGTGCCACTCCAAAAAGG&k=0&no_gap=0&offset=0&limit=50
0.133 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTTTTGGAGTGGCACTTG&k=0&no_gap=0&offset=0&limit=46
0.135 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).