GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:07:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus BAC clone RP23-16I14 from 15, complete sequence.
AC150560.5:26957-26976
GGACTGAACTAGGGCCCTAAGACTTGGTGG26957CAAGTTCCTGTACCTGCTGAGCCATCTATCTCATCAACCCTCTTCAGAGC
Acomys percivali genome assembly, chromosome: 13.
OU015754.1:11209386-11209405
CCATCAAACCCAGGTTGTGAGTTTTAGTAA11209386CAAGTTCCTGTACCTGCTGAACCATCTCACTATCCTTAAATTATGATTTT
Mus musculus genome assembly, chromosome: 1.
OW971552.1:181998866-181998885
GGATTGAACTCAGGACATCAGGCTTGGTGC181998866CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus genome assembly, chromosome: 1.
OW971573.1:182448593-182448612
GGATTGAACTCAGGACATCAGGCTTGGTGC182448593CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus genome assembly, chromosome: 1.
OW971594.1:181771755-181771774
GGATTGAACTCAGGACATCAGGCTTGGTGC181771755CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus domesticus genome assembly, chromosome: 1.
OW971615.1:181656536-181656555
GGATTGAACTCAGGACATCAGGCTTGGTGC181656536CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus genome assembly, chromosome: 1.
OW971636.1:182613552-182613571
GGATTGAACTCAGGACATCAGGCTTGGTGC182613552CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus molossinus genome assembly, chromosome: 1.
OW971658.1:186064434-186064453
GGATTGAACTCAGGACATCAGGCTTGGTGC186064434CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus spretus genome assembly, chromosome: 1.
OW971678.1:184813201-184813220
GGATTGAACTCAGGGCATCAGGCTTGGTGC184813201CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus spretus genome assembly, chromosome: 17.
OW971695.1:81786640-81786659
GGATTGAACTCATGTCATTAACTTTAGCAG81786640CAAGTTCCTGTACCTGCTGAGCCATCTTGTCAGCTCTGCACAAGTTTATC
Mus musculus genome assembly, chromosome: 1.
OW971699.1:181481640-181481659
GGATTGAACTCAGGACATCAGGCTTGGTGC181481640CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus genome assembly, chromosome: 1.
OW971720.1:182962957-182962976
GGATTGAACTCAGGACATCAGGCTTGGTGC182962957CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus genome assembly, chromosome: 1.
OW971741.1:182547338-182547357
GGATTGAACTCAGGACATCAGGCTTGGTGC182547338CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus musculus genome assembly, chromosome: 1.
OW971762.1:181311305-181311324
GGATTGAACTCAGGACATCAGGCTTGGTGC181311305CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus genome assembly, chromosome: 1.
OW971783.1:182463230-182463249
GGATTGAACTCAGGACATCAGGCTTGGTGC182463230CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus genome assembly, chromosome: 1.
OW971804.1:187063266-187063285
GGATTGAACTCAGGACATCAGGCTTGGTGC187063266CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus castaneus genome assembly, chromosome: 1.
OW971825.1:180558028-180558047
GGATTGAACTCAGGACATCAGGCTTGGTGC180558028CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus genome assembly, chromosome: 1.
OW971846.1:182789031-182789050
GGATTGAACTCAGGACATCAGGCTTGGTGC182789031CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Apodemus sylvaticus genome assembly, chromosome: 12.
OX359309.1:92916930-92916949
GGATTGAACTCAGGTCATCAGGCTTGGTGC92916930CAAGTTCCTGTACCTGCTGAACTCTATTAGCTGACTTACTTTTAAAGACA
Mus musculus genome assembly, chromosome: 1.
OX389795.1:190357458-190357477
GGATTGAACTCAGGACATCAGGCTTGGTGC190357458CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus genome assembly, chromosome: 1.
OX390145.1:186625074-186625093
GGATTGAACTCAGGACATCAGGCTTGGTGC186625074CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Mus musculus genome assembly, chromosome: 1.
OX439014.1:190223801-190223820
GGATTGAACTCAGGACATCAGGCTTGGTGC190223801CAAGTTCCTGTACCTGCTGAACTCTTACTAGCTGACTTACTTATTTCTAA
Peromyscus eremicus genome assembly, chromosome: 10.
OX460404.1:47075536-47075555
GGATCAAACTCAGGTCACCAGGCCTTGCAG47075536CAAGTTCCTGTACCTGCTGAGCCATCTTGCCAGCTCATGATTCTCATATA
Peromyscus eremicus genome assembly, chromosome: 10.
OX460476.1:46757105-46757124
GGATCAAACTCAGGTCACCAGGCCTTGCAG46757105CAAGTTCCTGTACCTGCTGAGCCATCTTGCCAGCTCATGATTCTCATATA
Micromys minutus genome assembly, chromosome: 25.
OZ004805.1:22139474-22139493
GGACTGAACTCTGGTCGTCAAGCTTAGCAG22139474CAAGTTCCTGTACCTGCTGAGCCATCTCGCAGGCCCAAGGCATTAAGTTG
Pelobates cultripes genome assembly, chromosome: 09.
OW240920.1:39807993-39808012
GATATTACTTTTTACCTGATCCCTGACTGT39807993CAAGTTCCTGTACCTGCTGAGTATCCATCCTGATCCAGTGTGGAGAGAGA
UI-R-BJ2-bph-g-02-0-UI.s1 UI-R-BJ2 Rattus norvegicus cDNA clone UI-R-BJ2-bph-g-02-0-UI 3', mRNA sequence.
BF419919.1:181-200
CCGTTCAAACCTGGCAACACATTTGCACAG181CAAGTTCCTGTACCTGCTGAGCTGTTTATCATGGGCTGCTCCTGGCTTGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3830.
FX701533.1:885-904
GACCTTTCTCCACCAACAACGCAGACACCG885CAAGTTCCTGTACCTGCTGACTCATCTTCATGATAGTGGACATTGACACC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_996.
FX736143.1:832-851
GACCTTTCTCCACCAACAACGCAGACACCG832CAAGTTCCTGTACCTGCTGACTCATCTTCATGATAGTGGACATTGACACC
Brassica rapa subsp. pekinensis clone KBrH066M06, complete sequence.
CU695310.1:28023-28042
AACCTTTCTCCACCAACAACGCAGACACCG28023CAAGTTCCTGTACCTGCTGACTCATCTTCATGATAGTGGACCTGCATACA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:43518037-43518056
AACCTTTCTCCACCAACAACGCAGACACCG43518037CAAGTTCCTGTACCTGCTGACTCATCTTCATGATAGTGAATCTGCATACA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:29025961-29025980
GACCTTTCTCCACCAACAACGCAGACACCG29025961CAAGTTCCTGTACCTGCTGACTCATCTTCATGATAGTGGACCTGCATACA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:32864535-32864554
AACCTTTCTCCACCAACAACGCAGACACCG32864535CAAGTTCCTGTACCTGCTGACTCATCTTCATGATAGTGAATCTGCATACA
Brassica rapa genome, scaffold: A01.
LR031571.1:35048021-35048040
AACCTTTCTCCACCAACAACGCAGACACCG35048021CAAGTTCCTGTACCTGCTGACTCATCTTCATGATAGTGAATCTGCATACA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:48219894-48219913
GACCTTTCTCCACCAACAACGCAGACACCG48219894CAAGTTCCTGTACCTGCTGACTCATCTTCATGATAGTGGACCTGCATACA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:35774541-35774560
AACCTTTCTCCACCAACAACGCAGACACCG35774541CAAGTTCCTGTACCTGCTGACTCATCTTCATGATAGTGAATCTGCATACA
Chenopodium album genome assembly, chromosome: 7.
OX419214.1:25055680-25055699
TATGAGGAGGAGCTACTGTCGTTGTTAGCT25055680CAAGTTCCTGTACCTGCTGAGGATGTGGCGGTACGATTTTCAGCTTTTAC
Mus musculus chromosome 1, clone RP24-170O7, complete sequence.
AC131980.9:125093-125112
TTAGAAATAAGTAAGTCAGCTAGTAAGAGT125093TCAGCAGGTACAGGAACTTGGCACCAAGCCTGATGTCCTGAGTTCAATCC
Mus musculus genome assembly, chromosome: 15.
OW971557.1:9205469-9205488
GCTCTGAAGAGGGTTGATGAGATAGATGGC9205469TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Mus musculus genome assembly, chromosome: 15.
OW971588.1:9304777-9304796
GCTCTGAAGAGGGTTGATGAGATAGATGGC9304777TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Mus musculus genome assembly, chromosome: 15.
OW971609.1:9091678-9091697
GCTCTGAAGAGGGTTGATGAGATAGATGGC9091678TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Mus musculus domesticus genome assembly, chromosome: 15.
OW971620.1:9226805-9226824
GCTCTGAAGAGGGTTGATGAGATAGATGGC9226805TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Mus musculus genome assembly, chromosome: 15.
OW971651.1:9162553-9162572
GCTCTGAAGAGGGTTGATGAGATAGATGGC9162553TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Mus musculus genome assembly, chromosome: 15.
OW971705.1:9146880-9146899
GCTCTGAAGAGGGTTGATGAGATAGATGGC9146880TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Mus musculus genome assembly, chromosome: 15.
OW971735.1:9264268-9264287
GCTCTGAAGAGGGTTGATGAGATAGATGGC9264268TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Mus musculus genome assembly, chromosome: 15.
OW971756.1:9165828-9165847
GCTCTGAAGAGGGTTGATGAGATAGATGGC9165828TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Mus musculus genome assembly, chromosome: 15.
OW971798.1:9235210-9235229
GCTCTGAAGAGGGTTGATGAGATAGATGGC9235210TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Mus musculus genome assembly, chromosome: 15.
OW971819.1:9261837-9261856
GCTCTGAAGAGGGTTGATGAGATAGATGGC9261837TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Mus musculus castaneus genome assembly, chromosome: 15.
OW971831.1:9300023-9300042
GCTCTGAAGAGGGTTGATGAGATAGATGGC9300023TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Mus musculus genome assembly, chromosome: 15.
OW971850.1:9319705-9319724
GCTCTGAAGAGGGTTGATGAGATAGATGGC9319705TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a005P24_SP6.
AM057893.1:405-424
GGTGTCAATGTCCACTATCATGAAGATGAG405TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a011K09_SP6.
AM059385.1:315-334
GGTGTCAATGTCCACTATCATGAAGATGAG315TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930051O20, 5' end partial sequence.
BB646915.1:381-400
GCTCTGAAGAGGGTTGATGAGATAGATGGC381TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
E1899 Chinese cabbage etiolated seedling library Brassica rapa subsp. pekinensis cDNA clone E1899, mRNA sequence.
BG544117.1:392-411
GGTGTCAATGTCCACTATCATGAAGATGAG392TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
BN15.001D01F011205 BN15 Brassica napus cDNA clone BN15001D01, mRNA sequence.
CD812981.1:399-418
GGTGTCAATATTCACTATCATGAAGATGAG399TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
BN15.019E11F020121 BN15 Brassica napus cDNA clone BN15019E11, mRNA sequence.
CD813337.1:398-417
GGTGTCAATATTCACTATCATGAAGATGAG398TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
BN15.026L24F020214 BN15 Brassica napus cDNA clone BN15026L24, mRNA sequence.
CD815560.1:426-445
GGTGTCAATGTCCACTATCATGAAGATGAG426TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
BN15.027I16F020325 BN15 Brassica napus cDNA clone BN15027I16, mRNA sequence.
CD815793.1:394-413
GGTGTCAATATTCACTATCATGAAGATGAG394TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
BN25.058D09F011029 BN25 Brassica napus cDNA clone BN25058D09, mRNA sequence.
CD824616.1:394-413
GGTGTCAATATTCACTATCATGAAGATGAG394TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
BN40.047E06F011228 BN40 Brassica napus cDNA clone BN40047E06, mRNA sequence.
CD830912.1:421-440
GGTGTCAATGTCCACTATCATGAAGATGAG421TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
83-E011129-021-005-F21-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022F215Q, mRNA sequence.
CX188689.1:245-264
GGTGTCAATATTCACTATCATGAAGATGAG245TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
38RDBRM_UP_027_D01_12JUL2004_009 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX267836.1:401-420
GGTGTCAATGTCCACTATCATGAAGATGAG401TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
38RDBRM_UP_048_A06_16JUL2004_048 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX269450.1:401-420
GGTGTCAATGTCCACTATCATGAAGATGAG401TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTC
KBrB045E06R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB045E06, genomic survey sequence.
DX044309.1:169-188
TGTATGCAGGTCCACTATCATGAAGATGAG169TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTT
KBrB087I05R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB087I05, genomic survey sequence.
DX076277.1:169-188
TGTATGCAGGTCCACTATCATGAAGATGAG169TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTT
Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930051O20 product:unclassifiable, full insert sequence.
AK047347.1:381-400
GCTCTGAAGAGGGTTGATGAGATAGATGGC381TCAGCAGGTACAGGAACTTGCCACCAAGTCTTAGGGCCCTAGTTCAGTCC
Rattus norvegicus clone CH230-173D5, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC131200.3:147579-147598
TTAAAACTAAGTCAGTCAGCTAACGAGAGG147579TCAGCAGGTACAGGAACTTGGCACCAAGCCTGATGACCTGAGTTCAATCC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH003N18, complete sequence.
AC189540.1:2096-2115
TGTATGCAGGTCCACTATCATGAAGATGAG2096TCAGCAGGTACAGGAACTTGCGGTGTCTGCGTTGTTGGTGGAGAAAGGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAAGTTCCTGTACCTGCTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGTTCCTGTACCTGCTGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.247 | 0.238 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGTTCCTGTACCTGCTGA&k=0&no_gap=0&offset=0&limit=50
0.728 | 0.481 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGCAGGTACAGGAACTTG&k=0&no_gap=0&offset=0&limit=13
0.748 | 0.020 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).