GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 19:12:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium repens mRNA, clone: WCC15m18_087, unspecified EST.
FY459476.1:40-59
CCATTTTTCCGATCACGCTTCACTCCTCCA40CAATAACCACCGCATCTCCTCCTTCTTCTCCCTCTCTCTCTCTCTCTCTC
Trifolium repens mRNA, clone: WCC25j09_038, unspecified EST.
FY462947.1:79-98
CATTTTTCCGATCCACGCTTCACTCCTCCA79CAATAACCACCGCATCTCCTCCTTCCTCTCTCACCCTCTCTTCTTATACA
Trifolium alexandrinum microsatellite TaSSR333 sequence.
JF767831.1:523-542
CCATTTTCCGATCCACGCTTCACTCCTCCA523CAATAACCACCGCATCTCCTCCTTCTCTCTCCTCATACACGGT
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:58953547-58953566
CATTTTTCCGATCCACCCTTCACTCCTCCA58953547CAATAACCACCGCATCTCCTCCTTCTTCTCTCACTCTCTCTCCTCATACA
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:7133007-7133026
TGGTACCGTGTATGAAGAGAGAGAATAAGG7133007AGGAGATGCGGTGGTTATTGTGGAGGAGTGAAGCGTGGATCGGAAAAATG
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:8148967-8148986
TGTATAAGAAGAGAGGGTGAGAGAGGAAGG8148967AGGAGATGCGGTGGTTATTGTGGAGGAGTGAAGCGTGGATCGGAAAAATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAATAACCACCGCATCTCCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAATAACCACCGCATCTCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.261 | 0.252 | search_plus_done; http://172.18.8.135:50400/match?q=CAATAACCACCGCATCTCCT&k=0&no_gap=0&offset=0&limit=50
0.288 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=AGGAGATGCGGTGGTTATTG&k=0&no_gap=0&offset=0&limit=46
0.290 | 0.001 | cgi_end;

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