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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 18:31:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_11614.
FX704325.1:856-875
TAGAGGCCATAAGAACTCTACCAGTTTCAT856CAATAACGAACCCAGCAGGTGGCTTAGGTATGGTAGGAGGAGAGTTCGCT
BONCO76TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONCO76, genomic survey sequence.
BZ497582.1:619-638
TAGAAGCCATAAGAACTCTACCAGTCTCAT619CAATAACGAACCCAGCAGGTGGCTTAAGTATGGTAGGAAGAGAGTTCGCA
BOIBO33TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIBO33, genomic survey sequence.
CC958147.1:142-161
TAGAAGCCATAAGAACTCTACCAGTCTCAT142CAATAACGAACCCAGCAGGTGGCTTAGGTATGGTAGGAGGAGAGTTCGCA
KBrH125O16 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT016104.1:639-658
TAGAGGCCATAAGAACTCTACCAGTTTCAT639CAATAACGAACCCAGCAGGTGGCTTAGGTATGGTAGGAGGAGAGTTCGCT
KBrH093A10R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH093A10, genomic survey sequence.
DU118730.1:577-596
TAGAGGCCATAAGAACTCTACCAGTTTCAT577CAATAACGAACCCAGCAGGTGGCTTAGGTATGGTAGGAGGAGAGTTCGCT
Raphanus sativus DNA, clone: RSDH33K02_FP-1.
GA890021.1:81-100
TGGAGGCCATAAGAACTCTACCGGTTTCAT81CAATAACGAACCCAGCAGGTGGTTTGGGTATGGTGGGAGGAGAGTTTGCA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:54328942-54328961
TAGAAGCCATAAGAACTCTACCAGTCTCAT54328942CAATAACGAACCCAGCAGGTGGTTTAGGTATGGTAGGAGGAGAGTTCGCA
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:41292955-41292974
TGGAGGCCATAAGAACTCTACCGGTTTCAT41292955CAATAACGAACCCAGCAGGTGGTTTGGGTATGGTGGGAGGAGAGTTTGCA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a012M08_T7.
AM390522.1:314-333
TGCGAACTCTCCTCCTACCATACCTAAGCC314ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
11FGYSDB_UP_003_F08_16OCT2003_054 Brassica seedling 11FGYSDB Brassica napus cDNA 5', mRNA sequence.
CN729356.1:387-406
TGCGAACTCTCCTCCTACCATACCTAAGCC387ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
Brassica oleracea var. viridis mRNA, clone: KALE-002J13, 5' end sequence.
DK456555.1:390-409
TGCGAACTCTCCTCCTACCATACCCAAACC390ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
Brassica oleracea var. viridis mRNA, clone: KALE-010O15, 5' end sequence.
DK459724.1:393-412
TGCGAACTCTCCTCCTACCATACCCAAACC393ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
Brassica oleracea var. viridis mRNA, clone: KALE-029F06, 5' end sequence.
DK466755.1:393-412
TGCGAACTCTCCTCCTACCATACCCAAACC393ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
Brassica oleracea var. viridis mRNA, clone: KALE-117M20, 5' end sequence.
DK500597.1:390-409
TGCGAACTCTCCTCCTACCATACCCAAACC390ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
Brassica oleracea var. viridis mRNA, clone: KALE-148O16, 5' end sequence.
DK512488.1:393-412
TGCGAACTCTCCTCCTACCATACCTAAGCC393ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
37RDBRH_UP_025_A10_25JUN2004_080 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE524123.1:395-414
TGCGAACTCTCCTCCTACCATACCTAAACC395ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
BNZB_RP_027_A02_28APR2004_016 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE558220.1:420-439
TGCGAACTCTCCTCCTACCATACCTAAGCC420ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
BNZB_UP_119_G10_23AUG2004_068 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE565317.1:58-77
AGCCCACTCTCCTCCCACCATACCTAAGCC58ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
65JKBNM0_T3_008_F10_16MAR2005_070 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587375.1:368-387
AGCGAACTCTCCTCCCACCATACCTAAGCC368ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCCTCTA
65JKBNM0_T3_013_E10_17MAR2005_072 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587799.1:369-388
TGCGAACTCTCCTCCTACCATACCTAAGCC369ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
BR100366 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-112B02 5', mRNA sequence.
EX114076.1:381-400
AGCGAACTCTCCTCCTACCATACCTAAGCC381ACCTGCTGGGTTCGTTATTGATGAAACTGGTAGAGTTCTTATGGCCTCTA
BR103751 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-32A01 5', mRNA sequence.
EX119921.1:391-410
AGCGAACTCTCCTCCTACCATACCTAAGCC391ACCTGCTGGGTTCGTTATTGATGAAACTGGTAGAGTTCTTATGGCCTCTA
RS1FS25TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD937553.1:403-422
TGCAAACTCTCCTCCCACCATACCCAAACC403ACCTGCTGGGTTCGTTATTGATGAAACCGGTAGAGTTCTTATGGCCTCCA
Raphanus sativus mRNA, clone: RSCS14C11, 5' end sequence.
FY450780.1:375-394
TGCAAACTCTCCTCCCACCATACCCAAACC375ACCTGCTGGGTTCGTTATTGATGAAACCGGTAGAGTTCTTATGGCCTCCA
KBrH018J22F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH018J22, genomic survey sequence.
DX890766.1:336-355
AGCGAACTCTCCTCCTACCATACCTAAGCC336ACCTGCTGGGTTCGTTATTGATGAAACTGGTAGAGTTCTTATGGCCTCTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004O21, complete sequence.
AC189637.2:43782-43801
AGCGAACTCTCCTCCTACCATACCTAAGCC43782ACCTGCTGGGTTCGTTATTGATGAAACTGGTAGAGTTCTTATGGCCTCTA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:2216115-2216134
TGCGAACTGTCCTCCTACCATACCTAAGCC2216115ACCTGCTGGGTTCGTTATTGATGAAACTGGTAGAGTTCTTATGGCCTCTA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:2173811-2173830
TGCGAACTGTCCTCCTACCATACCTAAGCC2173811ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:2772490-2772509
TGCGAACTCTCCTCCTACCATACCTAAGCC2772490ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
Brassica rapa genome, scaffold: A01.
LR031571.1:2148962-2148981
TGCGAACTCTCCTCCTACCATACCTAAGCC2148962ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCCTCTA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:2707435-2707454
TGCGAACTCTCCTCCTACCATACCTAAACC2707435ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:2325181-2325200
TGCAAACTCTCCTCCCACCATACCCAAACC2325181ACCTGCTGGGTTCGTTATTGATGAAACCGGTAGAGTTCTTATGGCCTCCA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:2149118-2149137
TGCGAACTCTCCTCCTACCATACCTAAGCC2149118ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCCTCTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAATAACGAACCCAGCAGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAATAACGAACCCAGCAGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.296 | 0.288 | search_plus_done; http://172.18.8.135:50400/match?q=CAATAACGAACCCAGCAGGT&k=0&no_gap=0&offset=0&limit=50
1.302 | 1.005 | search_minus_done; http://172.18.8.135:50400/match?q=ACCTGCTGGGTTCGTTATTG&k=0&no_gap=0&offset=0&limit=42
1.318 | 0.017 | cgi_end;

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