GGGenome | Results

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2025-04-09 11:02:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Elaeis guineensis EST, clone (6lib)_isotig27303.
LM620165.1:1198-1217

ACTTTCCAGAGCGGCCGGGGATCCCCCGTG1198CAATCAGGCTCCAGTTCCTCGCCCCAAACTTGTTCACGAGATTGCTCAGT

Alisma plantago-aquatica genome assembly, chromosome: 5.
OY856413.1:920489640-920489659

ATTTCCCAGAGCGTCCAGCTATTCCACGGG920489640CAATCAGGCTCCAGTTCCTCGGCCCGAACTTGGCCACTAGCTTGCTGAGT

EG-A11_010_D12 Oil palm abnormal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600371.1:346-365

ACTGAGCAATCTCGTGAACAAGTTTGGGGC346GAGGAACTGGAGCCTGATTGCACGGGGGATCCCCGGCCGCTCTGGAAAGT

TSA: Cyclocybe aegerita AA_4872, mRNA sequence.
JW842461.1:320-339

CTAGTTTTGGTGTCTTTTTTTTTCCTTGGA320GAGGAACTGGAGCCTGATTGAAACCTCCAGTGTTCCGAGAAATGGGAATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.015 | 0.015 | search_start;
0.230 | 0.215 | search_plus_done; http://172.18.8.135:50400/match?q=CAATCAGGCTCCAGTTCCTC&k=0&no_gap=0&offset=0&limit=50
0.315 | 0.084 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGAACTGGAGCCTGATTG&k=0&no_gap=0&offset=0&limit=48
0.317 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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