GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:28:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:19145507-19145526
TATCCAGAGGATTTCAAAGGCCAAGCAAGG19145507CAATGAGGCTACGGCCCAACTACATATCAGTGAGTGGGCTTTGTTTTTCA
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:18503205-18503224
TATCCAGAGGATTTCAAAGGCCAAGCAAGG18503205CAATGAGGCTACGGCCCAACTACATATCAGTGAGTGGGCTTTGTTTTTCA
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:19261655-19261674
TATCCAGAGGATTTCAAAGGCCAAGCAAGG19261655CAATGAGGCTACGGCCCAACTACATATCAGTGAGTGGGCTTTGTTTTTCA
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:35869073-35869092
CATCCAGAGGATTTCAAAGGCCAAGCAAGA35869073CAATGAGGCTACGGCCCAACTATATATCAGTGAGTGGGCTTTGTTTTTCA
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:34944844-34944863
TATCCAGAGGATTTCAAAGGCCAAGCAAGG34944844CAATGAGGCTACGGCCCAACTATATATCAGTGAGTGGGCTTTGTTTTTCA
Malus domestica genome assembly, chromosome: 15.
OU696691.1:36124415-36124434
CATCCAGAGGATTTCAAAGGCCAAGCAAGA36124415CAATGAGGCTACGGCCCAACTATATATCAGTGAGTGGGCTTTGTTTTTCA
Malus domestica genome assembly, chromosome: 15.
OU744556.1:35875979-35875998
CATCCAGAGGATTTCAAAGGCCAAGCAAGA35875979CAATGAGGCTACGGCCCAACTATATATCAGTGAGTGGGCTTTGTTTTTCA
Malus domestica genome assembly, chromosome: 15.
OU744967.1:36002834-36002853
CATCCAGAGGATTTCAAAGGCCAAGCAAGA36002834CAATGAGGCTACGGCCCAACTATATATCAGTGAGTGGGCTTTGTTTTTCA
Malus domestica genome assembly, chromosome: 15.
OU745005.1:35651015-35651034
TATCCAGAGGATTTCAAAGGTCAAGCAAGG35651015CAATGAGGCTACGGCCCAACTATATATCAGTGGGTGGGCTTTGTTTTTCA
Hymenobacter sp. DG25B, complete genome.
CP010054.1:28291-28310
AAAAGACCACACCGGGCGCTATGTGCTGGC28291CAATGAGGCTACGGCCCAACTGCACAGCATGAGCTTGCCCGAGCTGTTAG
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:20538595-20538614
TGAAAAACAAAGCCCACTCACTGATATATA20538595GTTGGGCCGTAGCCTCATTGTCTTGCTTGGCCTTTGAAATCCTCTGGATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAATGAGGCTACGGCCCAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAATGAGGCTACGGCCCAAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.121 | 1.113 | search_plus_done; http://172.18.8.135:50400/match?q=CAATGAGGCTACGGCCCAAC&k=0&no_gap=0&offset=0&limit=50
1.446 | 0.325 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGGGCCGTAGCCTCATTG&k=0&no_gap=0&offset=0&limit=40
1.447 | 0.001 | cgi_end;

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