GGGenome | Results

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2025-04-08 12:54:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Brassica rapa subsp. chinensis BcPR5 mRNA for pathogenesis-related 5, complete cds.
AB458897.1:44-63

CACTCACTCCTTGCTCAAGTGGAGCTCGAT44CAATGGCTTCACGAAACCTCTTCAACTTCGCTCTCCTTCTTCTTATCTCT

Brassica rapa subsp. chinensis pathogenesis-related 5 protein (PR5) mRNA, complete cds.
FJ605478.1:44-63

CACTCACTCCTTGCTCAAGTGGAGCTCGAT44CAATGGCTTCACGAAACCTCTTCAACTTCGCTCTCCTTCTTCTTATCTCT

Brassica rapa pathogenesis-related group 5 protein (BFTP) mRNA, complete cds.
U71244.1:23-42

CCTTGCTCAAGTGGAGCTCGAT23CAATGGCTTCACGAAACCTCTTCAACTTCGCTCTCCTTCTTCTTATCTCT

Colias croceus genome assembly, chromosome: 13.
HG991971.1:6586404-6586423

AGAGGTACTTTACGTGTCCGCCTAAATATG6586404GAGGTTTCGTGAAGCCATTGTATGTAACTGTTGGTGACTTCCCTGAAGAA

Pyralis farinalis genome assembly, chromosome: 2.
OX382258.1:9985446-9985465

CAAGAGTATATATAAACAAACCATAAAACT9985446GAGGTTTCGTGAAGCCATTGTTTTAACTAGGGTCCTGAATGCAGTTTGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=CAATGGCTTCACGAAACCTC&k=0&no_gap=0&offset=0&limit=50
0.137 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGTTTCGTGAAGCCATTG&k=0&no_gap=0&offset=0&limit=47
0.139 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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