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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:49:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036E23, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.
AC241015.1:152831-152850
AAGTTTCACTTATTGATCAGGGAAGTCAGG152831CACAAGAGTGCATTCAACAATTAGAAAGGGTGAGATATATATATATATAT
Brassica rapa subsp. pekinensis clone KBrH018N02, complete sequence.
CU915577.1:75593-75612
AAGTTTCACTTATTGATCAGGGAAGTCAGG75593CACAAGAGTGCATTCAACAATTAGAAAGGGTGAGATATATATATATATAT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:59834793-59834812
AAGTTTCACTTATTGATCAGGGAAGTCAGG59834793CACAAGAGTGCATTCAACAACTAGAAAGGGTGAGATATATATCATTTGTC
Brassica napus cultivar DH12075 mitogen-activated protein kinase kinase kinase 8.1 (MAPKKK8.1) mRNA, complete cds.
KF975690.1:926-945
AAGTTTCACTTATTGATCAGGGAAGTCAGG926CACAAGAGTGCATTCAACAACTAGAAAGGGAGATTGCATTACTTAGTCAG
Watersipora subatra genome assembly, chromosome: 1.
OY755158.1:70891371-70891390
ATTATACTAGTCAAATTTGATTATATACCG70891371CACAAGAGTGCATTCAACAATGTTTTCTTGGTGTAGAAATTGAAGCCAGA
Sequence 90689 from Patent EP2761003.
JC704908.1:94-113
ATATCGCTAGACATTCCAGTTTTGCTTTGT94TTGTTGAATGCACTCTTGTGTGATCAGTTTGAACGTGTTGTTGATATTCT
Sequence 91024 from Patent EP2761003.
JC705243.1:91-110
ATATCGCTAGACATTCCAGTTTTGCTTTGT91TTGTTGAATGCACTCTTGTGTGATCAGTTTGAACGTGTTGTTGATATTCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_16558.
FX695500.1:1172-1191
CTGACTAAGTAATGCAATCTCCCTTTCTAA1172TTGTTGAATGCACTCTTGTGCCTGACTTCCCTGATCAATAAGTGAAACTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_43422.
FX728776.1:1195-1214
CTGACTAAGTAATGCAATCTCCCTTTCTAA1195TTGTTGAATGCACTCTTGTGCCTGACTTCCCTGATCAATAAGTGAAACTT
TSA: Ctenomys sociabilis 80621.Ctso mRNA sequence.
JU516616.1:706-725
TGTGTTCCATTTGTTCGCTAGCTGGCAAGT706TTGTTGAATGCACTCTTGTGTCACGGGTGCAGCAGGTGCTCATTGCTCTG
BOIFZ24TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFZ24, genomic survey sequence.
CC958386.1:193-212
GACAAATGATATATTTCTCACCCTTTCTAG193TTGTTGAATGCACTCTTGTGCCCGACTTCCCTGATCAATAAGTGAAACTT
BOT01-67D18TF BOT01 Brassica oleracea genomic clone BOT01-67D18, genomic survey sequence.
FI720576.1:500-519
GACAAATGATATATTTCTCACCCTTTCTAG500TTGTTGAATGCACTCTTGTGCCCGACTTCCCTGATCAATAAGTGAAACTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078E04, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.
AC241068.1:120687-120706
ATATATATATATATATCTCACCCTTTCTAA120687TTGTTGAATGCACTCTTGTGCCTGACTTCCCTGATCAATAAGTGAAACTT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:12901002-12901021
TATAAGCTATATATATCTCACCCTTTCTAG12901002TTGTTGAATGCACTCTTGTGCCTGACTTCCCTGATCAATAAGTGAAACTT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:12807587-12807606
TAAGCTATATATATATCTCACCCTTTCTAG12807587TTGTTGAATGCACTCTTGTGCCTGACTTCCCTGATCAATAAGTGAAACTT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:19401553-19401572
GACAAATGATATATATCTCACCCTTTCTAG19401553TTGTTGAATGCACTCTTGTGCCTGACTTCCCTGATCAATAAGTGAAACTT
Brassica rapa genome, scaffold: A03.
LR031572.1:12690076-12690095
TAAGCTATATATATATCTCACCCTTTCTAG12690076TTGTTGAATGCACTCTTGTGCCTGACTTCCCTGATCAATAAGTGAAACTT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:19237796-19237815
GACAAATGATATATTTCTCACCCTTTCTAG19237796TTGTTGAATGCACTCTTGTGCCCGACTTCCCTGATCAATAAGTGAAACTT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:12815656-12815675
TAAGCTATATATATATCTCACCCTTTCTAG12815656TTGTTGAATGCACTCTTGTGCCTGACTTCCCTGATCAATAAGTGAAACTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACAAGAGTGCATTCAACAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACAAGAGTGCATTCAACAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.153 | 0.144 | search_plus_done; http://172.18.8.135:50400/match?q=CACAAGAGTGCATTCAACAA&k=0&no_gap=0&offset=0&limit=50
0.396 | 0.242 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTTGAATGCACTCTTGTG&k=0&no_gap=0&offset=0&limit=45
0.405 | 0.010 | cgi_end;

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