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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 13:58:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRCS04_0002K21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K21, mRNA sequence.
CN182568.1:219-238
CCAAACCCGCCTCTCATTTTCTAAAAATTA219CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
UCRPT01_0012P20_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0012P20, mRNA sequence.
CV709514.1:85-104
CCAAACCCGCCTCTCATTTTCTAAAAATTA85CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
CSAD-PNP1242A13 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242A13 5', mRNA sequence.
DR405300.1:229-248
CCAAACCCGCCTCTCATTTTCTAAAAATTA229CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
IC0AAA34CG01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY273697.1:228-247
CCAAACCCGCCTCTCATTTTCTAAAAATTA228CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
CS00-C1-102-006-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY665875.1:263-282
CCAAACCCGCCTCTCATTTTCTAAAAATTA263CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
CS00-C1-102-024-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY666793.1:265-284
CCAAACCCGCCTCTCATTTTCTAAAAATTA265CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
CS00-C3-704-052-H07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY733317.1:262-281
CCAAACCCGCCTCTCATTTTCTAAAAATTA262CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
LT33-C1-003-102-G06-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY885338.1:223-242
CCAAACCCGCCTCTCATTTTCTAAAAATTA223CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
IC0AAA34CG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA34CG01, mRNA sequence.
FC903062.1:228-247
CCAAACCCGCCTCTCATTTTCTAAAAATTA228CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
C34206A03EF PostHarveN Citrus clementina cDNA clone C34206A03, mRNA sequence.
FC932227.1:244-263
CCAAACCCGCCTCTCATTTTCTAAAAATTA244CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:11980061-11980080
CCAAACCCGCCTCTCATTTTCTAAAAATTA11980061CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
Apodemus sylvaticus genome assembly, chromosome: 6.
OX359303.1:104217382-104217401
CTCTTCAGTCCTTACAGCTTATATAACCTT104217382TAAAAAGATGGGGCCTTGTGAATCTTGCTTGTTTTAGGAGCCATTTAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACAAGGCCCCATCTTTTTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACAAGGCCCCATCTTTTTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.687 | 0.678 | search_plus_done; http://172.18.8.135:50400/match?q=CACAAGGCCCCATCTTTTTA&k=0&no_gap=0&offset=0&limit=50
0.721 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=TAAAAAGATGGGGCCTTGTG&k=0&no_gap=0&offset=0&limit=39
0.722 | 0.001 | cgi_end;

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