GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 12:10:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB024J16, complete sequence.
AC189275.2:23386-23405
CCAAGCCTCGTTCTCACAAGAGTACCAATC23386ATCAGAAGCCATACCTTGTGTAAACACGGCGCATATAGGTTACAGCAGTT
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:35091993-35092012
CAAGCCTTGTTCTCACAAGAGTACCAAATC35091993ATCAGAAGCCATACCTTGTGTAAACACGGCGCATATAGGTTACAGCAGTT
Brassica napus genome assembly, chromosome: A02.
HG994356.1:29561149-29561168
CAAGCCTTGTTCTCACAAGAGTACCAAATC29561149ATCAGAAGCCATACCTTGTGTAAACACGGCGCATATAGGTTACAGCAGTT
Brassica rapa genome, scaffold: A02.
LR031573.1:27825335-27825354
CCAAGCCTTGTTCTCACAAGATTACCAATC27825335ATCAGAAGCCATACCTTGTGTAAACACGGCGCATATAGGTTACAGCAGTT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:28756549-28756568
CCAAGCCTTGTTCTCACAAGATTACCAATC28756549ATCAGAAGCCATACCTTGTGTAAACACGGCGCATATAGGTTACAGCAGTT
Cepaea hortensis genome assembly, chromosome: 15.
OY992890.1:1515334-1515353
GGCCCTGTCTTGAAGCAATAGGTCCAGCAG1515334ATCAGAAGCCATACCTTGTGAGGCTGGCTGTTCTCTCGTCTGTGTAGTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACAAGGTATGGCTTCTGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACAAGGTATGGCTTCTGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.109 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=CACAAGGTATGGCTTCTGAT&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=ATCAGAAGCCATACCTTGTG&k=0&no_gap=0&offset=0&limit=50
0.149 | 0.004 | cgi_end;

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