GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 15:05:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ovis canadensis canadensis isolate 43U chromosome 4 sequence.
CP011889.1:64723401-64723418
CAGCGATAAAGAATCCTACAGTGCAGGAAA64723401CACAAGTTCCACCTCTGCGTCAKGAAGATTCCCCTGGAGAAGGGAATA
Apteryx australis mantelli genome assembly, scaffold: scaffold100.
LK391417.1:2204822-2204839
AGCAGGTGATGGACCTTTAGGAGAAGATGC2204822CACAAGTTCCACCTCTGCTGGGAAAATCATATAATTGAGGAGCCAGGG
Myripristis murdjan genome assembly, chromosome: 11.
LR597560.1:12632571-12632588
CCAATCTACCTTGGTCAATAAATTAGTTTA12632571CACAAGTTCCACCTCTGCCTCTTGTGTGTGGTGTGTGTGACCCGGGGA
Caprimulgus europaeus genome assembly, chromosome: 3.
OU015525.1:75469260-75469277
CTCCTGAACATCCTTGAGTAAGGAACACCA75469260CACAAGTTCCACCTCTGCCTGAGACACCAGCTGTAAGAGTGACCCTGG
Tetrao urogallus genome assembly, chromosome: 2.
OX596295.1:47421460-47421477
CACAAGCCCAGGCCCAGTCTTCCCTCCTAC47421460CACAAGTTCCACCTCTGCCTAACAGGGCCTCGGTCACGTTCTCTCTGC
Raja brachyura genome assembly, chromosome: 28.
OY740808.1:16089557-16089574
CTGACCCCGACTCTGATGGTAAGGTTGAGC16089557CACAAGTTCCACCTCTGCAGGCTGCACCAGCAGCTCCAGTTGACAGAG
Raja brachyura genome assembly, chromosome: 33.
OY740813.1:21140608-21140625
TCTGACCCGACTCTGGTGGTAAGGTTGAGC21140608CACAAGTTCCACCTCTGCAGGCCGCACCAGCAGCTCCAGTTGACAGAG
BR107310 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-23D06 5', mRNA sequence.
EX123480.1:77-94
GTCTGCTCTCTTGAACGATCTTTTCCTTGA77CACAAGTTCCACCTCTGCTGCTTCCAAGGTCCAGGAACCAACTATGCA
Brassica napus GSS, clone JBnB073C12, end read, primer SACL2(forward).
CU934538.1:228-245
GTATGCTCTCTTGAACGATCTTTTCCTCGA228CACAAGTTCCACCTCTGCTGCTTCCAAGGTTGTTGCGATAAATGTTGT
Brassica napus GSS, clone JBnB073C13, end read, primer SACL2(forward).
CU934540.1:228-245
GTATGCTCTCTTGAACGATCTTTTCCTCGA228CACAAGTTCCACCTCTGCTGCTTCCAAGGTTGTTGCGATAAATGTTGT
Tricholoma matsutake DNA, chromosome 7, complete sequence.
AP026544.2:541009-541026
CAGAAAAAACATCAGAGAACTACACTGCTG541009CACAAGTTCCACCTCTGCCACTGGTGAACCCAACAACATATGCTACAG
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:334712-334729
GACTCCACAGAATCTCACTTCCGGTGTCAC334712CACAAGTTCCACCTCTGCATGTTCATCACCATCTCCTATGAATCTTGC
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:3425038-3425055
ATTCCACAGAATCTCATTTCCAGTGTCCAC3425038CACAAGTTCCACCTCTGCATGTTCATCACCATCTCCTATGATGAATCT
Arachis ipaensis cultivar K30076 chromosome 03.
CP049894.1:3414550-3414567
ATTCCACAGAATCTCATTTCCAGTGTCCAC3414550CACAAGTTCCACCTCTGCATGTTCATCACCATCTCCTATGATGAATCT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:36219504-36219521
GTCTGCTCTCTTGAACGATCTTTTCCTTGA36219504CACAAGTTCCACCTCTGCTGCTTCCAAGGTTGTTGCGATAAATATTGT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:61142401-61142418
GTATGCTCTCTTGAACGATCTTTTCCTCGA61142401CACAAGTTCCACCTCTGCTGCTTCCAAGGTTGTTGCGATAAATGTTGT
Debaryomyces hansenii CBS767 chromosome A complete sequence.
CR382133.2:553967-553984
CATCTTTTCAATCAAATTGTCCTTAACCGC553967CACAAGTTCCACCTCTGCTTTGGTGTTCTTGGGCAGAGAGAGCTTGTC
Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
HG670306.1:23131877-23131894
CTGCTTCCGCGCCACCCTCTCCTACCAAGC23131877CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
LR862527.1:699687159-699687176
CTGCTTCCGCGCCACCCTCTCCTACCAAGC699687159CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
LR862527.1:747435919-747435936
CTGCTTCCGCGCCACCCTCTCCTACCAAGC747435919CACAAGTTCCACCTCTGCCACCCCAGTCTATTCCCGTTACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
LR862548.1:686239091-686239108
CTGCTTCCGCGCCACCCTCTCCTACCAAGC686239091CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
LR862569.1:12778107-12778124
CTGCTTCCGCGCCACCCTCTCCTACCAAGC12778107CACAAGTTCCACCTCTGCCACCCCAGTCTATTCCCGTTACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
LR865498.1:628508874-628508891
CTGCTTCCGCGCCACCCTCTCCTACCAAGC628508874CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
LR865519.1:699700025-699700042
CTGCTTCCGCGCCACCCTCTCCTACCAAGC699700025CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
LR865779.1:857989761-857989778
CTGCTTCCGCGCCACCCTCTCCTACCAAGC857989761CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
LR865779.1:915391501-915391518
CTGCTTCCGCGCCACCCTCTCCTACCAAGC915391501CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 3B.
LR878442.1:19025909-19025926
CTGCTTCCGCGCCACCCTCTCCTACCAAGC19025909CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 3B.
LR878442.1:19029197-19029214
CTGCTTCCGCGCCACCCTCTCCTACCAAGC19029197CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
LR878454.1:701404506-701404523
CTGCTTCCGCGCCACCCTCTCCTACCAAGC701404506CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 3B.
LS992087.1:15990027-15990044
CTGCTTCCGCGCCACCCTCTCCTACCAAGC15990027CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
LS992099.1:684947742-684947759
CTGCTTCCGCGCCACCCTCTCCTACCAAGC684947742CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum turgidum subsp. durum genome assembly, chromosome: 3B.
LT934116.1:17389875-17389892
CTGCTTCCGCGCCACCCTCTCCTACCAAGC17389875CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Larix sibirica chromosome 1 mitochondrion, complete sequence.
MT797187.1:698327-698344
AACAGATCCCCCCTCAGTTTCATCAACAGC698327CACAAGTTCCACCTCTGCAATTACCCCCGCATCAACAACCACAGTTGC
Triticum aestivum genome assembly, chromosome: 7B.
OU343182.1:706538069-706538086
CTGCTTCCGCGCCACCCTCTCCTACCAAGC706538069CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
OU963891.1:635866933-635866950
CTGCTTCCGCGCCACCCTCTCCTACCAAGC635866933CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
OU963891.1:698653948-698653965
CTGCTTCCGCGCCACCCTCTCCTACCAAGC698653948CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
OV100756.1:695383390-695383407
CTGCTTCCGCGCCACCCTCTCCTACCAAGC695383390CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Triticum aestivum genome assembly, chromosome: 7B.
OW530329.1:695383390-695383407
CTGCTTCCGCGCCACCCTCTCCTACCAAGC695383390CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Hedera helix genome assembly, chromosome: 3.
OX359266.1:44154308-44154325
ATGGGCAGTGCTGTTTGGGCTGATCACCAA44154308CACAAGTTCCACCTCTGCCGCCAACTCTTCCTCTCCAAAAAAACCCTC
Triticum aestivum genome assembly, chromosome: 7B.
OX637244.1:610966908-610966925
CTGCTTCCGCGCCACCCTCTCCTACCAAGC610966908CACAAGTTCCACCTCTGCCACCCCGGTCTATTCCCGTGACTCCACCCG
Daphnia pulex isolate KAP106 chromosome 6.
CP087232.1:1796874-1796891
TGATGTTAGCCCAACACATTTCCTGCGACA1796874CACAAGTTCCACCTCTGCTGGGCAATAGGCAAATGTGGCGTACAACAT
Daphnia pulex isolate KAP4 chromosome 6.
CP087244.1:1811545-1811562
TGATGTTAGCCCAACACATTTCCTGCGACA1811545CACAAGTTCCACCTCTGCTGGGCAATAGGCAAATGTGGCGTACAACAT
Daphnia pulex isolate STM2 chromosome 6.
CP087256.1:1895107-1895124
TGATGTTAGCCCAACACATTTCCTGCGACA1895107CACAAGTTCCACCTCTGCTGGGCAATAGGCAAATGTGTCGTATAACTT
Mimas tiliae genome assembly, chromosome: 5.
HG995243.1:8318351-8318368
ATCATATCATGGGTGTACAAAATGTGAGTG8318351CACAAGTTCCACCTCTGCCTATCCCTTCATCCTTCGCAGATACAGGAG
Mimas tiliae genome assembly, chromosome: 16.
HG995254.1:15185867-15185884
GGAAATACGCTCGGCAAACCGTCGATAGAG15185867CACAAGTTCCACCTCTGCCTTCTCCTTCGGGATACACGCACATTATAA
Euproctis similis genome assembly, chromosome: 8.
LR990111.1:2594975-2594992
GTACAAGTTCCATTCCACCCACGTTCCATC2594975CACAAGTTCCACCTCTGCATAGCTAAGCTAACGTTCAGTAAAATGTAT
Cheilosia vulpina genome assembly, chromosome: 5.
OU744280.1:27384988-27385005
GCCCCAAGCCGTCGCAGCAGCCACCAACGA27384988CACAAGTTCCACCTCTGCCGGCCGCAATGACATCGTCGCATCATCGTG
Cheilosia impressa genome assembly, chromosome: 5.
OX411884.1:22693874-22693891
GCCCCAAGCCGTCGCAGCCGCCGCCAACGA22693874CACAAGTTCCACCTCTGCCGGCCGCAATGACATCGTCGCATCATCGCG
Thereva unica genome assembly, chromosome: 3.
OX465283.1:135679088-135679105
TCTGCAAAATATTAAATGCATATGTGTGAA135679088CACAAGTTCCACCTCTGCTACACCCGAGTGTAGTGTATATACCTACAT
Cheilosia variabilis genome assembly, chromosome: 5.
OX579680.1:26021157-26021174
GTCCCAAGCCGTCGCAGCCGCCACCAACGA26021157CACAAGTTCCACCTCTGCCGGCCGCAATGACATCGTCGCATCATCGGG
Cheilosia grossa genome assembly, chromosome: 4.
OY720147.1:26804985-26805002
GCCCCAAGCCGTCGCAACCTCCCCCAACGA26804985CACAAGTTCCACCTCTGCCGACCGCAATGACGTCGTCTCATCATCGCG
Ferdinandea cuprea genome assembly, chromosome: 3.
OY754960.1:5759681-5759698
ATTGCCAAGTTCCCTCTGTGTTAGCCCACC5759681CACAAGTTCCACCTCTGCCTTCCGTGTGTAGAGTACTTCAACTGGGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACAAGTTCCACCTCTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACAAGTTCCACCTCTGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.300 | 0.292 | search_plus_done; http://172.18.8.135:50400/match?q=CACAAGTTCCACCTCTGC&k=0&no_gap=0&offset=0&limit=50
0.571 | 0.271 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGAGGTGGAACTTGTG&k=0&no_gap=0&offset=0&limit=0
0.571 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).