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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 06:42:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

000720AAAA002633HT (AAAA) Royal Gala 59 DAFB fruit, seeds removed Malus domestica cDNA clone AAAA002633, mRNA sequence.
CN855398.1:519-540
AAAAGACAAATTTCTCGAAAGCAATTACAT519CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
000722AAAA006585HT (AAAA) Royal Gala 59 DAFB fruit, seeds removed Malus domestica cDNA clone AAAA006585, mRNA sequence.
CN857605.1:519-540
AAAAGACAAATTTCTCGAAAGCAATTACAT519CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
010603AAWA005908HT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWA005908, mRNA sequence.
CN888363.1:523-544
GATAGTCAGTACGGTTGACATGGGGAACAT523CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAA
021119ABMA001676HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA001676, mRNA sequence.
CN911385.1:501-522
GGTAGTCAGTACGGTTGACATGGGGAACAT501CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
010615AVBC003492HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC003492, mRNA sequence.
CN938530.1:533-554
GATAGTCAGTACGGTTGACATGGGGAACAT533CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Mdlv4-4042c22.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4042c22 5' similar to SW:IF52_NICPL P24922 INITIATION FACTOR 5A-2, mRNA sequence.
CV826058.1:507-528
GGTAGTCAGTACGGTTGACATGGGGAACAT507CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCCTTGAAAAT
Mdas9003M22.g1 Apple_EST_Mdas Malus domestica cDNA similar to sp|Q9SC12|IF5A_SENVE Eukaryotic translation initiation factor 5A (eIF-5A) emb|CAB65463.1| translation initiation factor 5A precursor prote
DR993615.1:483-504
GGTAGTCAGTACGGTTGACATGGGGAACAT483CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
MtSO3-41 Medicago truncatula cv. Jemalong acute ozone stress Medicago truncatula cDNA, mRNA sequence.
GD190018.1:21-42
ACGATTCACATGAGGAACAT21CACAATTGTGGGACGAAGGAACAATATCTTCAAGTTTTTTCCCATTGAAGAT
MEUA135TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence.
GE348662.1:455-476
GATAATCAGTACGATTCACATGAGGAACAT455CACAATTGTGGGACGAAGGAACAATATCTTCAAGTTTTTTCCCATTGAAGAT
MEUB805TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence.
GE351896.1:458-479
GATAATCAGTACGATTCACATGAGGAACAT458CACAATTGTGGGACGAAGGAACAATATCTTCAAGTTTTTTCCCATTGAAGAT
Mdfwg2104L04_e21871.g1 Apple_EST_Mdfwg Malus domestica cDNA 5' similar to sp|Q9SC12|IF5A_SENVE Eukaryotic translation initiation factor 5A (eIF-5A) emb|CAB65463.1| translation initiation factor 5A pre
GO558309.1:519-540
GGTAGTCAGTACGGTTGACATGGGGAACAT519CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
METCB44TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence.
GT143086.1:455-476
GATAATCAGTACGATTCACATGAGGAACAT455CACAATTGTGGGACGAAGGAACAATATCTTCAAGTTTTTTCCCATTGAAGAT
TSA: Elaeocarpus photiniifolius mRNA, contig: Ep_rep_c284.
FX134179.1:403-424
GGTAGTCAGTACGATTGACATGGGGAACAT403CACAATTGTGGGACGAAGGAACAATATCTTCCAGCTTCTTTCCATTGAAGAT
TSA: Pyrus x bretschneideri Unigene8999_XinShao mRNA sequence.
JR604126.1:636-657
GGTAGTCAGTACGGTTGACATGGGGAACAT636CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
TSA: Pyrus x bretschneideri Unigene9000_XinShao mRNA sequence.
JR604127.1:665-686
GATAGTCAGTACGGTTGACATGGGGAACAT665CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
TSA: Pyrus x bretschneideri Unigene9001_XinShao mRNA sequence.
JR604128.1:600-621
GGTAGTCAGTACGGTTGACATGGGGAACAT600CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Medicago truncatula chromosome 8 clone mth2-23d6, complete sequence.
AC122160.21:13073-13094
AACATAAATGAAGAAATGGCCGACTTACAT13073CACAATTGTGGGACGAAGGAACAATATCTTCAAGTTTTTTCCCATTGAAGAT
Medicago truncatula clone MTYF1_F2_F3_F41G-C-5 unknown mRNA.
BT051284.1:496-517
GATAATCAGTACGATTCACATGAGGAACAT496CACAATTGTGGGACGAAGGAACAATATCTTCAAGTTTTTTCCCATTGAAGAT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:597278-597299
CGAAAGTCAAGTTTTGCGATAGCATTACAT597278CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:599080-599101
CGAAAGTCAAGTTATGCGATAGCATTACAT599080CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:11406556-11406577
AAAAGACAAATTTCTCGAAAGCAATTACAT11406556CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:626786-626807
CGAAAGTCAAGTTTTGTGATGGCATTACAT626786CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:10353842-10353863
GAAAGACAAATTTAGAGAAAGCAATTACAT10353842CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:614645-614666
CGAAAGTCAAGTTTTGCGATAGCATTACAT614645CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:11117285-11117306
GAAAGACAAATTTCTCGAAAGCAATTACAT11117285CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus domestica genome assembly, chromosome: 2.
OU696678.1:599001-599022
CGAAAGTCAAGTTATGCGATAGCATTACAT599001CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus domestica genome assembly, chromosome: 15.
OU696691.1:11341541-11341562
AAAAGACAAATTTCTCGAAAGCAATTACAT11341541CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus domestica genome assembly, chromosome: 2.
OU744543.1:597354-597375
CGAAAGTCAAGTTATGCGATAGCATTACAT597354CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:11414809-11414830
AAAAGACAAATTTCTCGAAAGCAATTACAT11414809CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus domestica genome assembly, chromosome: 2.
OU744954.1:610791-610812
CGAAAGTCAAGTTTTGCGATAGCATTACAT610791CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus domestica genome assembly, chromosome: 15.
OU744967.1:11332359-11332380
GAAAGACAAATTTCTCGAAAGCAATTACAT11332359CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus domestica genome assembly, chromosome: 2.
OU744992.1:598931-598952
CGAAAGTCAAGTTATGCGATAGCATTACAT598931CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Malus domestica genome assembly, chromosome: 15.
OU745005.1:11146111-11146132
AAAAGACAAATTTCTCGAAAGCAATTACAT11146111CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Geum urbanum genome assembly, chromosome: 1.
OX326997.1:784225-784246
AAATCAAACTAAGATAGAGAGAACTCACAT784225CACAATTGTGGGACGAAGGAACAATATCCTCAAGCTTCTTGCCATTGAAGAT
Geum urbanum genome assembly, chromosome: 3.
OX326999.1:861107-861128
TGAAATCAAACTAAGATAGAGAACTCACAT861107CACAATTGTGGGACGAAGGAACAATATCCTCAAGCTTCTTGCCATTGAAGAT
Geum urbanum genome assembly, chromosome: 4.
OX327000.1:800384-800405
AAATCAAACTAAGATAGAGAGAACTCACAT800384CACAATTGTGGGACGAAGGAACAATATCCTCAAGCTTCTTGCCATTAAAGAT
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:9454295-9454316
GATAGACAAATTTAGAGAAAGCAATTACAT9454295CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:537495-537516
CGAAAGTCTAGTTTTGTGATAGCATTACAT537495CACAATTGTGGGACGAAGGAACAATATCTTCAAGCTTCTTTCCATTGAAAAT
T110463e KV0 Medicago truncatula cDNA clone pKV0-1G7, mRNA sequence.
AI974513.1:275-296
ATCTTCAATGGGAAAAAACTTGAAGATATT275GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Medicago truncatula EST, clone MtNo337.
AJ388964.1:236-257
ATCTTCAATGGGAAAAAACTTGAAGATATT236GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Medicago truncatula EST, clone mt--abc955106b06.
AJ497204.1:255-276
ATCTTCAATGGGAAAAAACTTGAAGATATT255GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Medicago truncatula EST, clone mtgmadc120032b06.
AJ503271.1:259-280
ATCTTCAATGGGAAAAAACTTGAAGATATT259GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACT
Medicago truncatula EST, clone mtgmadc120040d03.
AJ503951.1:203-224
ATCTTCAATGGGAAAAAACTTGAAGATATT203GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Medicago truncatula EST MtBA08B05F1 : T3 end of clone MtBA08B05 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL366468.1:252-273
ATCTTCAATGGGAAAAAACTTGAAGATATT252GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Medicago truncatula EST MtBA22D05F1 : T3 end of clone MtBA22D05 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL368126.1:221-242
ATCTTCAATGGGAAAAAACTTGAAGATATT221GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Medicago truncatula EST MtBA22D05R1 : T7 end of clone MtBA22D05 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL368127.1:23-44
TGGGAAAAAACTTGAAGATATT23GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Medicago truncatula EST MtBB54F02F1 : T3 end of clone MtBB54F02 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL380794.1:228-249
ATCTTCAATGGGAAAAAACTTGAAGATATT228GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Medicago truncatula EST MtBB54F02R1 : T7 end of clone MtBB54F02 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL380795.1:18-39
AAAAACTTGAAGATATT18GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Medicago truncatula EST MtBC08G06F1 : T3 end of clone MtBC08G06 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).
AL382604.1:244-265
ATCTTCAATGGGAAAAAACTTGAAGATATT244GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Medicago truncatula EST MtBC21D12F1 : T3 end of clone MtBC21D12 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).
AL384334.1:197-218
ATCTTCAATGGGAAAAAACTTGAAGATATT197GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
TSA: Elaeocarpus photiniifolius mRNA, contig: Ep_rep_c11556.
FX145451.1:246-267
ATCTTCAATGGAAAGAAGCTGGAAGATATT246GTTCCTTCGTCCCACAATTGTGATGTTCCCCATGTCAATCGTACTGACTACC
TSA: Pyrus communis mRNA, contig: lc422.
FX609009.1:262-283
ATTTTCAATGGAAAGAAGCTTGAAGATATT262GTTCCTTCGTCCCACAATTGTGATGTTCCCCATGTCAACCGTACTGACTACC
TSA: Pyrus communis mRNA, contig: lc729.
FX609316.1:254-275
ATTTTCAATGGAAAGAAGCTTGAAGATATT254GTTCCTTCGTCCCACAATTGTGATGTTCCCCATGTCAACCGTACTGACTATC
TSA: Pyrus communis mRNA, contig: lc2455.
FX611042.1:140-161
ATTTTCAATGGAAAGAAGCTTGAAGATATT140GTTCCTTCGTCCCACAATTGTGATGTTCCCCATGTCAACCGTACTGACTACC
TSA: Pyrus communis mRNA, contig: lc35379.
FX643149.1:61-82
ATTTTCAATGGAAAGAAGCTTGAAGATATT61GTTCCTTCGTCCCACAATTGTGATGTTCCCCATGTCAACCGTACTGACTACC
Medicago truncatula chromosome 8 clone mth2-29p8, complete sequence.
AC152068.17:46203-46224
ATCTTCAATGGGAAAAAACTTGAAGATATT46203GTTCCTTCGTCCCACAATTGTGATGTAAGTCGGCCATTTCTTCATTTATGTT
Medicago truncatula clone MTYFP_FQ_FR_FS1G-O-14 unknown mRNA.
BT053533.1:261-282
ATCTTCAATGGGAAAAAACTTGAAGATATT261GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Medicago truncatula clone JCVI-FLMt-7N4 unknown mRNA.
BT135454.1:258-279
ATCTTCAATGGGAAAAAACTTGAAGATATT258GTTCCTTCGTCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATC
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:35356991-35357012
ATTTTCAATGGAAAGAAGCTTGAAGATATT35356991GTTCCTTCGTCCCACAATTGTGATGTAATGCTATCGCATAACTTGACTTTCG
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:41432964-41432985
ATTTTCAATGGAAAGAAGCTTGAAGATATT41432964GTTCCTTCGTCCCACAATTGTGATGTAATTGCTTTCTCTAAATTTGTCTTTC
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:37738389-37738410
ATTTTCAATGGAAAGAAGCTTGAAGATATT37738389GTTCCTTCGTCCCACAATTGTGATGTAATGCTATCGCAAAACTTGACTTTCG
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:45101263-45101284
ATTTTCAATGGAAAGAAGCTTGAAGATATT45101263GTTCCTTCGTCCCACAATTGTGATGTAATTGCTTTCGAGAAATTTGTCTTTT
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:41084615-41084636
ATTTTCAATGGAAAGAAGCTTGAAGATATT41084615GTTCCTTCGTCCCACAATTGTGATGTAATTGCTTTCGAGAAATTTGTCTTTC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:42076799-42076820
ATTTTCAATGGAAAGAAGCTTGAAGATATT42076799GTTCCTTCGTCCCACAATTGTGATGTAATTGCTTTCGAGAAATTTGTCTTTC
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:41101520-41101541
ATTTTCAATGGAAAGAAGCTTGAAGATATT41101520GTTCCTTCGTCCCACAATTGTGATGTAATTGCTTTCTCTAAATTTGTCTTTC
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:36012609-36012630
ATTTTCAATGGAAAGAAGCTTGAAGATATT36012609GTTCCTTCGTCCCACAATTGTGATGTAATGCTATCGCAAAACTTGACTTTCG
Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:28501801-28501822
ATTTTCAATGGAAAGAAGCTTGAAGATATT28501801GTTCCTTCGTCCCACAATTGTGATGTAATTGCCTTCTCTAAATTTGTCTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACAATTGTGGGACGAAGGAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACAATTGTGGGACGAAGGAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.815 | 0.806 | search_plus_done; http://172.18.8.135:50400/match?q=CACAATTGTGGGACGAAGGAAC&k=0&no_gap=0&offset=0&limit=50
0.974 | 0.159 | search_minus_done; http://172.18.8.135:50400/match?q=GTTCCTTCGTCCCACAATTGTG&k=0&no_gap=0&offset=0&limit=12
0.993 | 0.019 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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