GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 15:56:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene21063_B1 mRNA sequence.
JV331008.1:100-119
CTCTCTGTGCTGCGCTCAACACTAGAGGAA100CACACGGGAGAGTCTGATGAAAAACCACAAAAGGTCCTTTGATTCAGGAG
Musa acuminata subsp. malaccensis isolate AA chromosome 1.
CP126370.1:18183914-18183933
CTCTCTGTGCTGCGCTCAACACTAGAGGAA18183914CACACGGGAGAGTCTGATGAAAAACCACAAAAGGTCCTTTGATTCAGGAG
Musa acuminata subsp. malaccensis isolate AA chromosome 12.
CP126381.1:18382514-18382533
CTCTCTGTGCTGCGCTCAACACTAGAGGAA18382514CACACGGGAGAGTCTGATGAAAAACCACAAAAGGTCCTTTGATTCAGGAG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A01.
HG996466.1:10346736-10346755
CTCTCTGTGCTGCGCTCAACACTAGAGGAA10346736CACACGGGAGAGTCTGATGAAAAACCACAAAAGGTCCTTTGATTCAGGAG
Musa schizocarpa genome assembly, chromosome: S01.
LS990915.1:11184751-11184770
CTCTCTGTGCTGCGCTCAACACTAGAGGAA11184751CACACGGGAGAGTCTGATGAAAAACCACAAAAGGTCCTTTGATTCAGGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACACGGGAGAGTCTGATGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACACGGGAGAGTCTGATGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.126 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=CACACGGGAGAGTCTGATGA&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=TCATCAGACTCTCCCGTGTG&k=0&no_gap=0&offset=0&limit=45
0.145 | 0.000 | cgi_end;

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