GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:14:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Conger conger genome assembly, chromosome: 8.
OY741321.1:5838513-5838532
CACACACACACACACACACATGCACGTTCA5838513CACATTCACGCATTCACACGCACTGACACATTCACACACACACATACACA
Conger conger genome assembly, chromosome: 9.
OY741322.1:20372891-20372910
GACTCACCAAGGAGCATTGTCCCTGTCCCA20372891CACATTCACGCATTCACACGCACACAGCTCCAGCCAATGAGAGTGAACGG
Drepanosiphum platanoidis genome assembly, chromosome: 12.
OX402539.1:1001056-1001075
ACATGGCCACACGGCCACGGCAGCGGCGGA1001056CACATTCACGCATTCACACGACATTCACGCGCGTCGCGTTTGTTATATTT
Octopus vulgaris genome assembly, chromosome: 5.
OX597818.1:58299791-58299810
CTGGGAAAACGAAATAAAAACACAGAAACA58299791CACATTCACGCATTCACACGAACATATATATACAAATGAAATGTGGAGGC
Lamellibrachia columna genome assembly, chromosome: 8.
OY759268.1:20556700-20556719
TCCTGCGATATTTGTCAAGTTTGTTTTAGA20556700CACATTCACGCATTCACACGCCGTGGTTAAATGAATGTCATCCCTTCAGT
Salticus scenicus genome assembly, chromosome: 13.
OZ005660.1:243401242-243401261
AAGGATTCTCTAACAAAATTAATCTAATTA243401242CACATTCACGCATTCACACGGGTGAAAAGCCATATATGTGTGAAATATGT
Epinephelus fuscoguttatus DNA, LG23, complete sequence.
AP022697.1:18091402-18091421
GGCTCCATGTATGGCAGCCTCGGCCACCAG18091402CGTGTGAATGCGTGAATGTGGCATGTAGTGAAGAGCTCAGTTCAGACCAA
Blennius ocellaris genome assembly, chromosome: 5.
OY730205.1:15356872-15356891
GGCACCTTGCATGGCAGTCGCCTCCATTGG15356872CGTGTGAATGCGTGAATGTGACTATAGATACTGTAGCACTGCTCAAGCAG
Trifolium repens isolate ACLI19 chromosome 06_Pall.
CP125847.1:51605666-51605685
ATTAAGATCAAATAGCATAGATCATGTGAT51605666CGTGTGAATGCGTGAATGTGAGATTGTCCTGACTTCTAGGAATCCTGTCT
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:13395543-13395562
CTTGAGCTGAAATTGGCATTTACATTTGTG13395543CGTGTGAATGCGTGAATGTGTAGTTAATGTGCTTGGGTACGATAAAGGAT
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:9815119-9815138
CTTGAGCTGAAATTGGCATTTACATTTGTG9815119CGTGTGAATGCGTGAATGTGTAGTTAATGTGCTTGGGTACGATAAAGGAT
Salticus scenicus genome assembly, chromosome: 13.
OZ005660.1:244979045-244979064
ACATATTTCACACATATATGGCTTTTCACC244979045CGTGTGAATGCGTGAATGTGTAATCAGATTATTTTTCTTAGAGAATAGTT
Maratus michaelseni genome assembly, chromosome: 6.
OZ007592.1:38128665-38128684
GGTGACTTTTCTTATAACCAAACTTTTAAA38128665CGTGTGAATGCGTGAATGTGTTTAAAGAATGTCGATTTGTGAGAACCACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACATTCACGCATTCACACG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACATTCACGCATTCACACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.346 | 0.337 | search_plus_done; http://172.18.8.135:50400/match?q=CACATTCACGCATTCACACG&k=0&no_gap=0&offset=0&limit=50
0.432 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=CGTGTGAATGCGTGAATGTG&k=0&no_gap=0&offset=0&limit=44
0.437 | 0.005 | cgi_end;

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