GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2026-03-05 22:51:49, GGGenome : DDBJ release 139.0 (Sep, 2025)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:12552990-12553009
GATCTTTTATTCCGGTTCGAGTCGGTTAAA12552990CACATTTTGGTTCAATTCGGTTTTTAAAGAGAGAGAGAGAGAGAGAGAGA
Brassica napus cultivar Xiang5A chromosome 9.
CP151904.1:12169475-12169494
GATCTTTTATTCCGGTTCGAGTCGGTTAAA12169475CACATTTTGGTTCAATTCGGTTTTTAAAGAGAGAGAGAGAGAGAGAGAGA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:12016343-12016362
GATCTTTTATTCCGGTTCGAGTCGGTTAAA12016343CACATTTTGGTTCAATTCGGTTTTTAAAGAGAGAGAGAGAGAGAGAGAGA
Brassica rapa subsp. narinosa genome assembly, chromosome: 9.
OZ282450.1:12544193-12544212
GATCTTTTATTCCGGTTCGAGTCGGTTAAA12544193CACATTTTGGTTCAATTCGGTTTTTAAAGAGAGAGAGAGAGAGAGAGAGA
Gentianella amarella genome assembly, chromosome: 9.
OZ287154.1:112872168-112872187
GAACATGTTATTTATAAAACCGTGGTTCTA112872168CACATTTTGGTTCAATTCGGTTTGAGTCGAACGATCGATTCGGTTTTCGG
Gentianella amarella genome assembly, chromosome: 9.
OZ287181.1:115035958-115035977
GAACATGTTATTTATAAAACCGTGGTTCTA115035958CACATTTTGGTTCAATTCGGTTTGAGTCGAACGATCGATTCGGTTTTCGG
Meconema thalassinum genome assembly, chromosome: X.
OX336389.2:12313107-12313126
TTACTCGCAGGGTTCCAAAGGGTAAGTATA12313107CACATTTTGGTTCAATTCGGTGAAACTGTGTAGATTTGGACCAAAGGGCC
Meconema thalassinum genome assembly, chromosome: 5.
OX336393.1:444122871-444122890
TTATTCGCAGAGTTCGAAAGGGTAAGTGTG444122871CACATTTTGGTTCAATTCGGTAAAATGGTGTCGATTTGTGCCAAAGGGCC
Oryza longiglumis cultivar IRGC 106525 chromosome 6_JJ.
CP143126.1:12282777-12282796
ACCTGTAAATTATATCTTGGCCAGCAACGA12282777CCGAATTGAACCAAAATGTGCCACAATTGTCAGACTCATGACCTAACAGG
Oryza ridleyi isolate KAUST chromosome 6_JJ.
CP161331.1:13661166-13661185
ACCTGTAAATTATATCTTGGCCAGCAACGA13661166CCGAATTGAACCAAAATGTGCCACAATTGTCAGACTCATGACCTAACAGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACATTTTGGTTCAATTCGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACATTTTGGTTCAATTCGG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.460 | 0.452 | search_plus_done; http://172.18.8.135:50900/match?q=CACATTTTGGTTCAATTCGG&k=0&no_gap=0&offset=0&limit=50
0.762 | 0.302 | search_minus_done; http://172.18.8.135:50900/match?q=CCGAATTGAACCAAAATGTG&k=0&no_gap=0&offset=0&limit=42
0.764 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).