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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 02:48:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mdfrjg3506M08_e7354.g1 Apple_EST_Mdfrjg Malus domestica cDNA 5', mRNA sequence.
GO542378.1:316-338
CTTCACCCTTCCCATCCTGCTCCTGAACTG316CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAAAAAGTATTT
Mdwdb7507N11_e33303.g1 Apple_EST_Mdwdb Malus domestica cDNA 5' similar to ref|NP_196993.2| expressed protein [Arabidopsis thaliana], mRNA sequence.
GO563289.1:369-391
CTTCACCCTTCCCATCCTGCTCCTGAACTG369CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAAAAAGTATTT
Pyrus pyrifolia mRNA, clone: NFW2_01_22, 3' end sequence, expressed in flower.
HX743531.1:279-301
CTTCACCATTCCCATCCTGCTCCTGAACTG279CACCAAACACAACCTCAGTGGTACTCTCACTACTCTGCTCGTAGAAAGTATTT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:5645946-5645968
CTTCACCCTTCCCATCCTGCTCCTGAACTG5645946CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAGAAAGTATTT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:6120572-6120594
CTTCACCCTTCCCATCCTGCTCCTGAACTG6120572CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAGAAAGTATTT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:5909597-5909619
CTTCACCCTTCCCATCCTGCTCCTGAACTG5909597CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAGAAAGTATTT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:6514593-6514615
CTTCACCCTTCCCATCCTGCTCCTGAACTG6514593CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAGAAAGTATTT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:6231168-6231190
CTTCACCCTTCCCATCCTGCTCCTGAACTG6231168CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAGAAAGTATTT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:5705444-5705466
CTTCACCCTTCCCATCCTGCTCCTGAACTG5705444CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAGAAAGTATTT
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:5870888-5870910
CTTCACCCTTCCCATCCTGCTCCTGAACTG5870888CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAGAAAGTATTT
Malus domestica genome assembly, chromosome: 16.
OU696692.1:6229865-6229887
CTTCACCCTTCCCATCCTGCTCCTGAACTG6229865CACCAAACACAACCTCAGTGGTATTCTTACTCTGCTCGTAGAAAGTATTTGGG
Malus domestica genome assembly, chromosome: 16.
OU744557.1:6306455-6306477
CTTCACCCTTCCCATCCTGCTCCTGAACTG6306455CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAGAAAGTATTT
Malus domestica genome assembly, chromosome: 16.
OU744968.1:6210300-6210322
CTTCACCCTTCCCATCCTGCTCCTGAACTG6210300CACCAAACACAACCTCAGTGGTATTCTTACTCTGCTCGTAGAAAGTATTTGGG
Malus domestica genome assembly, chromosome: 16.
OU745006.1:6243278-6243300
CTTCACCCTTCCCATCCTGCTCCTGAACTG6243278CACCAAACACAACCTCAGTGGTATTCTTACTCTGCTCGTAGAAAGTATTTGGG
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:6583401-6583423
CTTCACCCTTCCCATCCTGCTCCTGAACTG6583401CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAGAAAGTATTT
Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:6149030-6149052
CTTCACCCTTCCCATCCTGCTCCTGAACTG6149030CACCAAACACAACCTCAGTGGTATTTTCGCTACTCTGCTCATAGATGGTATTT
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:5126582-5126604
CTTCACCCTTCCCATCCTGCTCCTGAACTG5126582CACCAAACACAACCTCAGTGGTATTCTCACTACTCTGCTCGTAGAAAGTATTT
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH054_01122m, 5' end sequence.
AB450727.1:487-509
AAATACTTTCTACGAGCAGAGTAGTGAGAG487TACCACTGAGGTTGTGTTTGGTGCAGTTCAGGGAGCANGGATGGGGAATGGTG
010717ABBA001713HT (ABBA) Pacific Rose spur buds from OFF trees Malus domestica cDNA clone ABBA001713, mRNA sequence.
CN900718.1:572-594
AAATACTTTCTACGAGCAGAGTAGTGAGAA572TACCACTGAGGTTGTGTTTGGTGCAG
TSA: Pyrus pyrifolia mRNA, contig: contig_4892.
FX432727.1:487-509
AAATACTTTCTACGAGCAGAGTAGTGAGAG487TACCACTGAGGTTGTGTTTGGTGCAGTTCAGGAGCAGGATGGGAA
TSA: Pyrus communis mRNA, contig: lc18460.
FX626999.1:58-80
AAATACTTTCTACGAGCAGAGTAGTGAGAA58TACCACTGAGGTTGTGTTTGGTGCAGTTCAGGAGCAGGATGGGAAGGGTGAAG
TSA: Pyrus x bretschneideri Unigene82890_XinShao mRNA sequence.
JR667211.1:99-121
AAATACTTTCTACGAGCAGAGTAGTGAGAG99TACCACTGAGGTTGTGTTTGGTGCAGTTCAGGAGCAGGATGGGAATGGTGAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACCAAACACAACCTCAGTGGTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCAAACACAACCTCAGTGGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.768 | 0.759 | search_plus_done; http://172.18.8.135:50400/match?q=CACCAAACACAACCTCAGTGGTA&k=0&no_gap=0&offset=0&limit=50
0.948 | 0.180 | search_minus_done; http://172.18.8.135:50400/match?q=TACCACTGAGGTTGTGTTTGGTG&k=0&no_gap=0&offset=0&limit=33
0.952 | 0.004 | cgi_end;

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