GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:00:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens 3 BAC RP11-354H21 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
AC117462.5:10554-10573
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA10554CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Homo sapiens DNA, chromosome 3, nearly complete genome.
AP023463.1:78070174-78070193
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA78070174CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Homo sapiens isolate CHM13 chromosome 3.
CP068275.2:78058555-78058574
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA78058555CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Homo sapiens isolate NA24385 chromosome 3.
CP139518.1:77978882-77978901
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA77978882CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Homo sapiens isolate NA24385 chromosome 3.
CP139541.1:78063214-78063233
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA78063214CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Sciurus carolinensis genome assembly, chromosome: 15.
LR738605.1:24265255-24265274
CCCCCTTTGTCCACTTGGAATTGAAAACTC24265255CACCACTCTGCTCTTCCTCCCGTTCCTTAACCTCCTTATTTACTTGGAGA
Pollachius pollachius genome assembly, chromosome: 7.
OX465130.1:9478991-9479010
TGTTAGTTTGATAGACTGTGGTCTCTGACT9478991CACCACTCTGCTCTTCCTCCTCTGTTAGGTTCCACTGAGACAGTAGAGAT
Sprattus sprattus genome assembly, chromosome: 3.
OY735287.1:58091930-58091949
CTGGGTTATGGGCCCAGGACGCTTCCGCTG58091930CACCACTCTGCTCTTCCTCCATGCAGTTAACCTCCTGCCGTACTTCACAT
Sprattus sprattus genome assembly, chromosome: 3.
OY735287.1:58112752-58112771
CTGGGTTATGGGCCCAGCACGCTTCCGCTG58112752CACCACTCTGCTCTTCCTCCCTGCAGTTAACCTCCTGCCGTACTTCACAT
Sprattus sprattus genome assembly, chromosome: 3.
OY735287.1:58118548-58118567
CTGGGTTATGGGCCCAGCACGCTTCCGCAG58118548CACCACTCTGCTCTTCCTCCCTGCAGTTAACCTCCTGCCGTACTTCACAT
Sprattus sprattus genome assembly, chromosome: 3.
OY735287.1:58120460-58120479
CTGGGTTATGGGCCCAGCACGCTTCCGCTG58120460CACCACTCTGCTCTTCCTCCCTGCAGTTAACCTCCTGCCGTACTTCACAT
Sprattus sprattus genome assembly, chromosome: 3.
OY735287.1:58121062-58121081
CTGGGTTATGGGCCCAGCACGCTTCCGCTG58121062CACCACTCTGCTCTTCCTCCCTGCAGTTAACCTCCTGCCGTACTTCACAT
Eukaryotic synthetic construct chromosome 3.
CP034502.1:77992870-77992889
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA77992870CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Eukaryotic synthetic construct chromosome 3.
CP034527.1:77992870-77992889
CTACCCTGTGTGGCTCTCAGGTGAGCAGTA77992870CACCACTCTGCTCTTCCTCCTTCTCTGTGGATCACACCAGCCTCCTAGTC
Acomys percivali genome assembly, chromosome: 15.
OU015756.1:46663891-46663910
CCTTGATGGGACACTTAAACTCATCTGTGA46663891GGAGGAAGAGCAGAGTGGTGAGGGACAGGGAAACGGGCTGGGACTGGTAG
Peromyscus eremicus genome assembly, chromosome: 23.
OX460416.1:23068569-23068588
GGACCAGAATAGCTCATAGTGTGGTTGACT23068569GGAGGAAGAGCAGAGTGGTGATAGGAAAGGACATGGAAAGACATCACTCT
Peromyscus eremicus genome assembly, chromosome: 23.
OX460488.1:24824411-24824430
GGACCAGAATAGCTCATAGTGTGGTTGACT24824411GGAGGAAGAGCAGAGTGGTGATAGGAAAGGACATGGAAAGACATCACTCT
Balaenoptera acutorostrata genome assembly, chromosome: 5.
OX465354.1:55813229-55813248
TGCACAGAAGGATACATTTCTGTGGGTCAG55813229GGAGGAAGAGCAGAGTGGTGTGGGTGAGGTACACGAAGCATTGGAGAAAC
Electrona antarctica genome assembly, chromosome: 9.
OX578254.1:36354799-36354818
GGGCTGGGACAAGATGGAGGAGGAGGAGAA36354799GGAGGAAGAGCAGAGTGGTGAAGGACCGAGGGCAGAGACGGACGTCCTGA
Fringilla coelebs genome assembly, chromosome: 2.
OY740725.1:9847404-9847423
TGGTGTGCTGCAGCATCCCTGGGAGAGGAG9847404GGAGGAAGAGCAGAGTGGTGAAAAGGGGCTGGGAGCTCAGCCTTCTCTCC
Homo sapiens clone RP11-21J10, WORKING DRAFT SEQUENCE, 16 unordered pieces.
AC025616.3:100623-100642
GACTAGGAGGCTGGTGTGATCCACAGAGAA100623GGAGGAAGAGCAGAGTGGTGTACTGCTCACCTGAGAGCCACACAGGGTAG
Octopus vulgaris genome assembly, chromosome: 8.
OX597821.1:3899181-3899200
AGAAGAGTGGAGGAAGAAGAGAAGAGTGGA3899181GGAGGAAGAGCAGAGTGGTGGAATATGAAGAGGAGGAGTGTAGAGAAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACCACTCTGCTCTTCCTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCACTCTGCTCTTCCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.151 | 0.142 | search_plus_done; http://172.18.8.135:50400/match?q=CACCACTCTGCTCTTCCTCC&k=0&no_gap=0&offset=0&limit=50
0.223 | 0.072 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGGAAGAGCAGAGTGGTG&k=0&no_gap=0&offset=0&limit=36
0.229 | 0.005 | cgi_end;

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