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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 12:36:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Porphyra yezoensis cDNA, clone:PF033h12_r, 5'end.
AU189064.1:1-18
1CACCCAACATATCGCCGTTGCACCTCCGGTCAATCACCCCGCCTGCCC
Porphyra yezoensis cDNA, clone:PFL065d09_r, 5'end.
AU194790.1:13-30
CCCGCTGCCCGC13CACCCAACATATCGCCGTTGCACCTCCGGTCAATCACCCCGCCTGCCC
Digitaria exilis genome assembly, chromosome: 9A.
LR994620.1:45475719-45475736
ATCCGGCGATAAGTGCTATGGGCCACGGCC45475719CACCCAACATATCGCCGTTTCAAATGGCGGTTACTTGGTTTCGCCGGA
Digitaria exilis genome assembly, chromosome: UA.
LR994622.1:3054532-3054549
ATCCGGCGATAAGTGCTATGGGCCACGGCC3054532CACCCAACATATCGCCGTTTCAAATGGCGGTTACTTGGTTTCGCCGGA
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737491.1:191443078-191443095
TTGATGAGCAGGAACGTCTGGGCCTGATCA191443078CACCCAACATATCGCCGTGGGGTTGTGGAGTTCTGTTTGTCAAGAAGA
Hordeum bulbosum genome assembly, chromosome: 3H_4.
OY737634.1:178967313-178967330
TTGATGAGCAGGAACGTCTGGGCCTGATCA178967313CACCCAACATATCGCCGTGGGGTTGTGGAGTTCTGTTTGTCAAGAAGA
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737868.1:186246882-186246899
TTGATGAGCAGGAACGTCTGGGCCTGATCA186246882CACCCAACATATCGCCGTGGGGTTGTGGAGTTCTGTTTGTCAAGAAGA
Agathobaculum sp. NTUH-O15-33 chromosome, complete genome.
CP136187.1:412827-412844
AAAAGCAGTTCTTGTACCACATGCCTCTTT412827CACCCAACATATCGCCGTGGTCTGCAGTTAAAATGATGATCGTGTTTT
uncultured Amylibacter sp. isolate Z_MB383 genome assembly, chromosome: Z_MB383_contig-1.
OX044354.1:1728255-1728272
AAGAGGCGACAATCCTGTTTGTTTCAGACC1728255ACGGCGATATGTTGGGTGAACGTGGGTTATGGTTCAAAATGTCCTTCT
Hordeum bulbosum genome assembly, chromosome: 3H_2.
OY737498.1:181372948-181372965
TTCTTCTTGACAAACAGAACTCCACAACCC181372948ACGGCGATATGTTGGGTGTGATCAGGCCCAGACGTTCCTGCTCATCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACCCAACATATCGCCGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCCAACATATCGCCGT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.179 | 0.170 | search_plus_done; http://172.18.8.135:50400/match?q=CACCCAACATATCGCCGT&k=0&no_gap=0&offset=0&limit=50
0.290 | 0.111 | search_minus_done; http://172.18.8.135:50400/match?q=ACGGCGATATGTTGGGTG&k=0&no_gap=0&offset=0&limit=42
0.291 | 0.002 | cgi_end;

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