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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 12:01:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6119.
FX692647.1:839-858
ATCACTCAGACGTAACGCAGCTTTTGAAAC839CACCGTTGGCTTATCTCCAACTGAAGCTGGTCTGTGTCTCTGATTTGCTA
BOHMM67TR BOHM Brassica oleracea genomic clone BOHMM67, genomic survey sequence.
BH594124.1:647-666
ATCACTCAGACGTAACGCAGCTTTTGAAAC647CACCGTTGGCTTATCTCCAACTGAAGCTGATCTGTGTCTCTGA
BONAC73TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONAC73, genomic survey sequence.
BZ429338.1:273-292
ATCACTCAGACGTAACGCAGCTTTTGAAAC273CACCGTTGGCTTATCTCCAACTGAAGCTGGTCTGTGTCTCTGATTTGCTG
BOKBD15TF BO_10_15_KB_nuc Brassica oleracea genomic clone BOKBD15, genomic survey sequence.
BZ523123.1:110-129
ATCACTCAGACGTAACGCAGCTTTTGAAAC110CACCGTTGGCTTATCTCCAACTGAAGCTGGTCTGTGTCTCTGATTTGCTG
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:36979661-36979680
ATCACTCAGACGTAACGCAGCATTTGAAAC36979661CACCGTTGGCTTATCTCCAACTGAAGCTGGTCTTTGTCTCTGATTTGCTG
Brassica napus genome assembly, chromosome: A02.
HG994356.1:31497387-31497406
ATCACTCAGACGTAACGCAGCTTTTGAAAC31497387CACCGTTGGCTTATCTCCAACTGAAGCTGGCCTGTGTCTCTGATTTGCTG
Brassica napus genome assembly, chromosome: C02.
HG994366.1:59577730-59577749
ATCACTCAGACGTAACGCAGCTTTTGAAAC59577730CACCGTTGGCTTATCTCCAACTAAAGCTGGTCTGTGTCTCTGACTTGCTG
Brassica rapa genome, scaffold: A02.
LR031573.1:29688458-29688477
ATCACTCAGACGTAACGCAGCTTTTGAAAC29688458CACCGTTGGCTTATCTCCAACTGAAGCTGGTCTGTGTCTCTGATTTGCTA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:60840952-60840971
ATCACTCAGACGTAACGCAGCTTTTGAAAC60840952CACCGTTGGCTTATCTCCAACTGAAGCTGGTCTGTGTCTCTGATTTGCTG
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:30620043-30620062
ATCACTCAGACGTAACGCAGCTTTTGAAAC30620043CACCGTTGGCTTATCTCCAACTGAAGCTGGTCTGTGTCTCTGATTTGCTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189497.2:1389-1408
TAGCAAATCAGAGACACAGACCAGCTTCAG1389TTGGAGATAAGCCAACGGTGGTTTCAAAAGCTGCGTTACGTCTGAGTGAT
Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.
AC149635.1:96401-96420
CAGCAAGTCAGAGACACAGACCAGCTTTAG96401TTGGAGATAAGCCAACGGTGGTTTCAAAAGCTGCGTTACGTCTGAGTGAT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:2730365-2730384
CAGCAAGTCAGAGACACAGACCAGCTTTAG2730365TTGGAGATAAGCCAACGGTGGTTTCAAAAGCTGCGTTACGTCTGAGTGAT
Diabrotica virgifera virgifera genome assembly, chromosome: 8.
OU830631.1:114416823-114416842
GGAACCAATCAGCCACAATAAGAACGAATC114416823TTGGAGATAAGCCAACGGTGGCGATCCAGATTCTACGAGGCTTTAGGCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACCGTTGGCTTATCTCCAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCGTTGGCTTATCTCCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.354 | 0.345 | search_plus_done; http://172.18.8.135:50400/match?q=CACCGTTGGCTTATCTCCAA&k=0&no_gap=0&offset=0&limit=50
0.451 | 0.097 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGAGATAAGCCAACGGTG&k=0&no_gap=0&offset=0&limit=40
0.454 | 0.003 | cgi_end;

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