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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 04:51:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia mRNA, clone: NFR2_14_03, 3' end sequence, expressed in fruit.
HX739868.1:310-332
CCCACAACTTTCTATATGTTTTTTTTATGA310CACCTCCGTTAACCCCTCATAATAATAAACTACTAATGACATAATGACACATT
Pyrus pyrifolia mRNA, clone: NFW3_06_28, 3' end sequence, expressed in flower.
HX744160.1:134-156
CCCACGACTTTCTATATGTTTTTTTTATGA134CACCTCCGTTAACCCCTCATAATAATAAACTACTAATGACATAATGACACATT
SSR_PbR17 Pyrus x bretschneideri leaf SSR Pyrus x bretschneideri genomic clone PbR17 5', genomic survey sequence.
GS928031.1:69-91
CCCACAACTTTCTATATGTTTTTTTTATGA69CACCTCCGTTAACCCCTCATAATAATAAACTACTAATGACATAATGACACATT
SSR_PbR18 Pyrus x bretschneideri leaf SSR Pyrus x bretschneideri genomic clone PbR18 5', genomic survey sequence.
GS928032.1:70-92
CCCACAACTTTCTATATGTTTTTTTTATGA70CACCTCCGTTAACCCCTCATAATAATAAACTACTAATGACATAATGACACATT
SSR_PbR13 Pyrus communis leaf SSR Pyrus communis genomic clone PbR13 5', genomic survey sequence.
GS928047.1:71-93
CCCACAACTTTCTATATGTTTTTTTTATGA71CACCTCCGTTAACCCCTCATAATAATAAACTACTAATGACATAATGACACATT
SSR_PbR14 Pyrus communis leaf SSR Pyrus communis genomic clone PbR14 5', genomic survey sequence.
GS928048.1:69-91
CCCACAACTTTCTATATGTTTTTTTTATGA69CACCTCCGTTAACCCCTCATAATAATAAACTATTAATGACATAATGACACATT
Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:10649295-10649317
CCCCCAACTATCCATATGTTTTTTTTTTGA10649295CACCTCCGTTAACCCCTCATAATAATAAACTACAAATAACACATTCTTCAAAG
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH025_05729m, 5' end sequence.
AB450707.1:1381-1403
AATGTGTCATTATGTCATTAGTAGTTTATT1381ATTATGAGGGGTTAACGGAGGTGTCATAAAAAAAACATATAGAAAGTTGTGGG
Pyrus pyrifolia mRNA, clone: NFR1_30_32, 5' end sequence, expressed in fruit.
HX748179.1:104-126
AATGTGTCATTATGTCATTAGTAGTTTATT104ATTATGAGGGGTTAACGGAGGTGTCATAAAAAAAACATATAGAAAGTTGTGGG
Pyrus pyrifolia mRNA, clone: NFR1_30_35, 5' end sequence, expressed in fruit.
HX748182.1:104-126
AATGTGTCATTATGTCATTAGTAGTTTATT104ATTATGAGGGGTTAACGGAGGTGTCATAAAAAAAACATATAGAAAGTTGTGGG
Pyrus pyrifolia mRNA, clone: NFR5_02_19, 5' end sequence, expressed in fruit.
HX755367.1:91-113
AATGTGTCATTATGTCATTAGTAGTTTATT91ATTATGAGGGGTTAACGGAGGTGTCATAAAAAAAACATATAGAAAGTTGTGGG
TSA: Pyrus communis mRNA, contig: lc49113.
FX655355.1:111-133
AATGTGTCATTATGTCATTAGTAGTTTATT111ATTATGAGGGGTTAACGGAGGTGTCATNCNTATAGAAAGTTGTGGGGGNCAAG
TSA: Pyrus x bretschneideri Unigene29567_XinShao mRNA sequence.
JR622707.1:43-65
AATGTGTCATTATGTCATTAGTAGTTTATT43ATTATGAGGGGTTAACGGAGGTGTCATAAAAAAAACATATAGAAAGTTGTGGG
SSR_PbR19 Pyrus x bretschneideri leaf SSR Pyrus x bretschneideri genomic clone PbR19 5', genomic survey sequence.
GS928033.1:194-216
AATGTGTCATTATGTCATTAGTAGTTTATT194ATTATGAGGGGTTAACGGAGGTGTCATAAAAAAAACATATAGAAAGTTGTGGG
SSR_PbR15 Pyrus communis leaf SSR Pyrus communis genomic clone PbR15 5', genomic survey sequence.
GS928049.1:191-213
AATGTGTCATTATGTCATTAGTAGTTTATT191ATTATGAGGGGTTAACGGAGGTGTCATAAAAAAAACATATAGAAAGTTGTGGG
SSR_PbR16 Pyrus communis leaf SSR Pyrus communis genomic clone PbR16 5', genomic survey sequence.
GS928050.1:219-241
AATGTGTCATTATGTCATTAGTAGTTTATT219ATTATGAGGGGTTAACGGAGGTGTCATAAAAAAAACATATAGAAAGTTGTGGG
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:21433067-21433089
AATGTGTCATTATGTCATTAGTAGTTGTTT21433067ATTATGAGGGGTTAACGGAGGTGTCATAAAAAAAACATATAGAAAGTTGTGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACCTCCGTTAACCCCTCATAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCTCCGTTAACCCCTCATAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.390 | 0.381 | search_plus_done; http://172.18.8.135:50400/match?q=CACCTCCGTTAACCCCTCATAAT&k=0&no_gap=0&offset=0&limit=50
0.799 | 0.409 | search_minus_done; http://172.18.8.135:50400/match?q=ATTATGAGGGGTTAACGGAGGTG&k=0&no_gap=0&offset=0&limit=43
0.806 | 0.007 | cgi_end;

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