GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 20:47:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pachycladon cheesemanii 45811_205_2241_5_41.Pachleaf mRNA sequence.
JP979589.1:60-79
TCCATCAAGTCTATAATGTAAATAATCCCA60CACGCATCATCCAAAAATCACATCTCTAAACCGGTACCTACAGCTCTCTA
TSA: Chorispora bungeana CK_37989 mRNA sequence.
KA026056.1:221-240
AATCCACCAAGTCTATAATGGAAGAACCCA221CACGCATCATCCAAAAATCACACATCTCTAAACCGGTAGCTAAAGGTCTC
TSA: Chorispora bungeana T_36858 mRNA sequence.
KA073688.1:226-245
AATCCACCAAGTCTATAATGGAAGAACCCA226CACGCATCATCCAAAAATCACACATCTCTAAACCGGTAGCTAAAGGTCTC
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 5.
CP094635.1:9734059-9734078
TCCAACAAGTCTATAATGTAAATAATCCCA9734059CACGCATCATCCAAAAATCACATCTCTAAACCGGTAGCTACAGCTCTCTA
Camelina sativa cultivar CO46 chromosome 10.
CP131540.1:6725614-6725633
TCCAACAAGTCTATAATGTAAATAATCCCA6725614CACGCATCATCCAAAAATCACATCTCTAAACCGGTAGCTACAGCTCTCTA
Allium cepa genome assembly, chromosome: 6.
LR994634.1:48776941-48776960
ATGAAAACCGATGGACAAATATATCTTTAA48776941CACGCATCATCCAAAAATCAATAGCAAACCTTTGTAACCATAAAATAATA
Barbarea vulgaris genome assembly, chromosome: 4.
OY763890.1:6274711-6274730
AACCCAATAAGTCTATTATGTAATAACCCA6274711CACGCATCATCCAAAAATCAAATCTCTAAACCGGTACCTACGTAACTTAC
Cardamine chenopodiifolia genome assembly, chromosome: 7.
OZ000465.1:5663701-5663720
AAAACCCAACAAGTCTATAATGTAATACCA5663701CACGCATCATCCAAAAATCAAATCTCTAAACCGGTAGCTACAGCTCTCTA
Accipiter gentilis genome assembly, chromosome: 20.
OV839381.1:1751355-1751374
ATGTTAATAAAGTCAGACTAGTTTTGTATC1751355TGATTTTTGGATGATGCGTGTAAATTAAGAGAATTCTAAAATAAAGAAAG
TSA: Pachycladon fastigiatum 89253_306_5244_7_41.Pafaleaf mRNA sequence.
JR031018.1:176-195
TAGAGAGCTGTAGCTACCGGTTTAGAGATG176TGATTTTTGGATGATGCGTGTGGGATTATTTACATTATAGACTTGTTGGA
TSA: Allium cepa CUDHLF2_9543 mRNA sequence.
JR852361.1:612-631
TATTATTTTATGGTTACAAAGGTTTGCTAT612TGATTTTTGGATGATGCGTGTTAAAGATATATTTGTCCATCGGTTTTCAT
Cardamine chenopodiifolia genome assembly, chromosome: 31.
OZ000489.1:11754152-11754171
TAGAGAGCTGTAGCTACCGATTTAGAGATG11754152TGATTTTTGGATGATGCGTGTCGGTTATTACTTGTTTGGGGGGGGGGGGG
Eumerus sabulonum genome assembly, chromosome: 2.
OX645061.1:119499681-119499700
ATGCGAGCAATATGTGCTTTATTTCATCTT119499681TGATTTTTGGATGATGCGTGACAATGTGATGACCATCGGCTGTCGGTCAG
Pilophorus perplexus genome assembly, chromosome: 10.
OY037017.1:20860493-20860512
TTATTACATTTTCAAGTTCTGAATTAAATT20860493TGATTTTTGGATGATGCGTGTTGGATGGAAGTTGAGAAAGTTAAAACAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACGCATCATCCAAAAATCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACGCATCATCCAAAAATCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.161 | 0.153 | search_plus_done; http://172.18.8.135:50400/match?q=CACGCATCATCCAAAAATCA&k=0&no_gap=0&offset=0&limit=50
0.230 | 0.069 | search_minus_done; http://172.18.8.135:50400/match?q=TGATTTTTGGATGATGCGTG&k=0&no_gap=0&offset=0&limit=42
0.234 | 0.004 | cgi_end;

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