GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:15:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Spergularia bocconei genome assembly, chromosome: 11.
OY734952.1:2119982-2120001
AGCGATCAAAGAGGTTCATCGTAGAACCCC2119982CACGGAAGCCATTACACCTCAACCTAGCAGTATGCGCTAATCGGACTCCA
Chorisops tibialis genome assembly, chromosome: 3.
OY770264.1:180911010-180911029
GATATGGTGTTCTGGCAGACACAGTCGCAG180911010CACGGAAGCCATTACACCTCGTGGCCTAGTAATTTCGTAATTGAATTCTA
Dianthus caryophyllus mRNA, clone: CES09E16, 5' end sequence.
FY385614.1:292-311
TGGACTCCGACTCGCGAATACCGATAGATT292GAGGTGTAATGGCTTCCGTGGCGGTGCTACTATGAATCTCTTTGATCGAT
Dianthus caryophyllus mRNA, clone: CES14P19, 5' end sequence.
FY387767.1:263-282
TGGACTCCGACTCGCGAATACCGATAGATT263GAGGTGTAATGGCTTCCGTGGCGGTGCTACTATGAATCTCTTTGATCGAT
Dianthus caryophyllus mRNA, clone: CES17I07, 5' end sequence.
FY388724.1:306-325
TGGACTCCGACTCGCGAATACCGATAGATT306GAGGTGTAATGGCTTCCGTGGCGGTGCTACTATGAATCTCTTTGATCGAT
Dianthus caryophyllus mRNA, clone: CFES16_K10, 5' end sequence.
FY400088.1:217-236
TGGACTCCGACTCGCGAATACCGATAGATT217GAGGTGTAATGGCTTCCGTGGCGGTGCTACTATGAATCTCTTTGATCGAT
TSA: Dianthus caryophyllus mRNA, contig: CAK09.758.C1.
FX298099.1:347-366
TGGACTCCGACTCGCGAATACCGATAGATT347GAGGTGTAATGGCTTCCGTGGCGGTGCTACTATGAATCTCTTTGATCGAT
TSA: Silene latifolia Sl_contig4378 mRNA sequence.
JO780397.1:362-381
TGGAGTCCGATTAGCGCATAATGATAGGTT362GAGGTGTAATGGCTTCCGTGGTGGTGCCACCATGAATCTCTTTGATCGAT
Spergularia bocconei genome assembly, chromosome: 8.
OY734949.1:24250839-24250858
TGGAGTCAGATTAGCGCACACTGATAGGTT24250839GAGGTGTAATGGCTTCCGTGGGGGTTCTACGATGAACCTCTTTGATCGAT
Spergularia marina genome assembly, chromosome: 6.
OY804549.1:27245049-27245068
TGGAGTCAGATTAGTGCATACTGATAGGTT27245049GAGGTGTAATGGCTTCCGTGGGGGTTCTACGATGAACCTCTTTGATCGCT
Spergularia marina genome assembly, chromosome: 13.
OY804556.1:22321342-22321361
TGGAGTCCGATTAGCGCATACTGCTAGGTT22321342GAGGTGTAATGGCTTCCGTGGGGGTTCTACGATGAACCTCTTTGATCGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACGGAAGCCATTACACCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACGGAAGCCATTACACCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.153 | 0.144 | search_plus_done; http://172.18.8.135:50400/match?q=CACGGAAGCCATTACACCTC&k=0&no_gap=0&offset=0&limit=50
0.754 | 0.601 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGTGTAATGGCTTCCGTG&k=0&no_gap=0&offset=0&limit=48
0.760 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).