GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:09:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_22000.
FX695607.1:384-404
ACTCTTCATTGATCACACATGCCGCTGCAG384CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_9489.
FX731655.1:418-438
ACTCTTCATTGATCACACATGCCGCTGCAG418CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:14473802-14473822
ACTCTTCATTGATCACACATGCCGCTGCAG14473802CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC
Brassica napus genome assembly, chromosome: A04.
HG994358.1:8895771-8895791
ACTCTTCATTGATCACACATGCCGCTGCAG8895771CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC
Brassica rapa genome, scaffold: A04.
LR031576.1:8153638-8153658
ACTCTTCATTGATCACACATGCCGCTGCAG8153638CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:8399312-8399332
ACTCTTCATTGATCACACATGCCGCTGCAG8399312CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC
BR057266 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-005D05 5', mRNA sequence.
EX072622.1:376-396
GATTGAGATGTACAAGAAAAAACTCGGTTT376ACATGGAGCTGATGATCCGTGCTGCAGCGGCATGTGTGATCAATGAAGAGT
BR058000 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-014F12 5', mRNA sequence.
EX073356.1:120-140
GATTGAGATGTACAAGAAAAAACTCGGTTT120ACATGGAGCTGATGATCCGTGCTGCAGCGGCATGTGTGATCAATGAAGAGT
Brassica rapa subsp. pekinensis male sterility linked AFLP marker P01SCR01 genomic sequence.
FJ851467.1:235-255
GATTGAGATGTACAAGAAAAAACTCGGTTT235ACATGGAGCTGATGATCCGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACGGATCATCAGCTCCATGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACGGATCATCAGCTCCATGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.337 | 0.328 | search_plus_done; http://172.18.8.135:50400/match?q=CACGGATCATCAGCTCCATGT&k=0&no_gap=0&offset=0&limit=50
0.527 | 0.191 | search_minus_done; http://172.18.8.135:50400/match?q=ACATGGAGCTGATGATCCGTG&k=0&no_gap=0&offset=0&limit=44
0.529 | 0.002 | cgi_end;

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