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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 21:39:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Arachis duranensis DurSNP_c37637.Ardu mRNA sequence.
HP037604.1:71-90
AAACTCCCAAAAGTTAAGGTACAAAAAACC71CACGGGACCTAGTCCAAAAAAAAATCTTCCACCATCAGAATAATGGGTAC
PV_GBa0063L07.f PV_GBa Phaseolus vulgaris genomic clone PV_GBa0063L07 5', genomic survey sequence.
EI460430.1:556-575
AAAACTTCCTCAACTTGAGAAATGAAAAAA556CACGGGACCTAGTCCAAAAAATGTCTCCACTACTATAAAA
VUK027P09.R VUK Phaseolus vulgaris genomic 3', genomic survey sequence.
JY848797.1:11-30
ACGTAAAACC11CACGGGACCTAGTCCAAAAAATTCCTCCACTATGAAAGTGGGATTACAAT
Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
AP015036.1:38098428-38098447
TTTAACGTGGAAAACCCTCCCGGGAAAAAT38098428CACGGGACCTAGTCCAAAAAAATATCTCCACTATAAAAGTAGGATTACAG
Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
AP015040.1:4370942-4370961
TTTAACGTGGAAAATCCTCTCGGAAAAAAC4370942CACGGGACCTAGTCCAAAAAAATATCTCCACTATAAAAGTAGGATTACAG
Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
AP015042.1:7967384-7967403
TTTAACGTGGAAAATCCTCTCGGAAAAAAC7967384CACGGGACCTAGTCCAAAAAATTATCTCCACTATGAAAGTAGGATTACAG
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-07.
CP023119.1:12914447-12914466
AAAACCTCCTCAAAGTGACAAGGAAACAAC12914447CACGGGACCTAGTCCAAAAAATATTTATATTATATAAAGTATGATTACAA
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-08.
CP023120.1:3472021-3472040
AAAACCCCCTCAATGTGAGAAGGAAACAAC3472021CACGGGACCTAGTCCAAAAAATATTTTCACTATAGAAAGTATGATTACAA
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-10.
CP023122.1:3996368-3996387
AAAACCTCCTCAATGTGAGAAGGAAACAAC3996368CACGGGACCTAGTCCAAAAAATTTCTTCACTATAGAAAGTATGATTAATT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-11.
CP023123.1:6731734-6731753
AAAACCTCATCAATGTGAGAACGAAACAAC6731734CACGGGACCTAGTCCAAAAATATATTAACTATAACAAATATGATTACAAT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-14.
CP023126.1:16412968-16412987
AAAACCTCCTCAATGTGAGAATGAAACAAC16412968CACGGGACCTAGTCCAAAAAATATCCCCACTATAAAAAGTAGAATTACAA
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-14.
CP023126.1:16422586-16422605
AAAACCTCCTCAATGTGAGAATGAAACAAC16422586CACGGGACCTAGTCCAAAAAATATCCCCACTATAAAAAGTAGAATTACAA
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:121542614-121542633
AAAACTCCCAAAAGAGGGACAAAAAAAATC121542614CACGGGACCTAGTCCAAAAAAATCTTCCACTATCAGAATAATGGGTACAC
Arachis hypogaea cultivar Shitouqi chromosome A06.
CP030988.1:78127878-78127897
GGAAAACCCCCAAAAGAGGGACAAAAAACC78127878CACGGGACCTAGTCCAAAAAAATCTTCCACTATCAAAATAATGGGTACAC
Arachis hypogaea cultivar Shitouqi chromosome B10.
CP031002.1:130735608-130735627
GGAAAACCCCAAAAGAGGGACAAAAAAACA130735608CACGGGACCTAGTCCAAAAAAATCTTCCACTATCAGAATAATGGGTACAC
Arachis ipaensis cultivar K30076 chromosome 10.
CP049901.1:132484956-132484975
GGAAAACCCCAAAAGAGGGACAAAAAAACA132484956CACGGGACCTAGTCCAAAAAAATCTTCCACTATCAGAATAATGGGTACAC
Canna indica chromosome 1.
CP136890.1:79165989-79166008
AACACCTTTCAAAGAACGAGAGGCAACCTT79165989CACGGGACCTAGTCCAAAAATAAACTCCACTATCATCAAAGAAGTTTAAT
Canna indica chromosome 1.
CP136890.1:96649215-96649234
AACACCTCTCAAAGAACGAGAGACAATATC96649215CACGGGACCTAGTCCAAAAATAAACTCAACTATTACCAAATCAAGGTACA
Canna indica chromosome 7.
CP136896.1:55009340-55009359
AACACCTCTCAAAGAACGAGAGGCAACCTC55009340CACGGGACCTAGTCCAAAAATAAACTCCACTATCACCAAATCAAGGTACA
Canna indica chromosome 7.
CP136896.1:55014151-55014170
AACACCTCTCAAAGAACGAGAGGCAACCTC55014151CACGGGACCTAGTCCAAAAATAAACTCCACTATCACCAAATCAAGGTACA
Inga oerstediana genome assembly, chromosome: 2.
OY723400.1:76939632-76939651
GAAAACTCCCTAGATGTGAGAGATAAAAAC76939632CACGGGACCTAGTCCAAAAAACCTTTATTATGATTCATATTTTTTTCTTG
Inga oerstediana genome assembly, chromosome: 2.
OY723400.1:76976043-76976062
GAAAACTCCCTCGATGTGAGAGATAAAAAC76976043CACGGGACCTAGTCCAAAAAACCTTTATTATGATTAATATTTACAACAAT
Viscum album genome assembly, chromosome: 10_4.
OY728166.1:745444380-745444399
TTTTACATGGAAAACCCAAAAGGGAAAACC745444380CACGGGACCTAGTCCAAAAATAGGGATCCACTAAAATAGATAAGTACATG
Viscum album genome assembly, chromosome: B1.
OY728167.1:717210402-717210421
TTTTACGTGGAAAACCCGAAAGGGAAAAAC717210402CACGGGACCTAGTCCAAAAAGAGGGATCCACTAAAATCAAGAGGTACACA
PV_GBa0110M12.f PV_GBa Phaseolus vulgaris genomic clone PV_GBa0110M12 5', genomic survey sequence.
EI493640.1:161-180
GTAATCCTATTTTTATAGTAGTGGAGACAT161TTTTTGGACTAGGTCCCGTGTTTTTTCATTTCTCAAGTTGAGGAAGTTTT
AdH1153-CPY2-G15TR AdH1 Arachis duranensis genomic clone AdH1153-CPY2-G15, genomic survey sequence.
FI297810.1:629-648
GTGTACCCATTATTCTGATAGTGGAAGATT629TTTTTGGACTAGGTCCCGTGGATTTTTTTTGTCCCTCTTTTGGGAGTT
PV_GBb213I15.R PV_GBb Phaseolus vulgaris genomic 3', genomic survey sequence.
JY507322.1:105-124
ATTGTAATCCCACTTTCATAGTGGAGGAAT105TTTTTGGACTAGGTCCCGTGGGTTTTACTTCTCAAATTGAGGAAGATTTT
PV_GBb129M08.F PV_GBb Phaseolus vulgaris genomic 5', genomic survey sequence.
JY512028.1:433-452
ATTGTAATCCCACTTTCATAGTGGAGGAAT433TTTTTGGACTAGGTCCCGTGGGTTTTACTTCTCAAATTGAGGAAGATTTT
PV_GBb129G08.F PV_GBb Phaseolus vulgaris genomic 5', genomic survey sequence.
JY550791.1:431-450
ATTGTAATCCCACTTTCATAGTGGAGGAAT431TTTTTGGACTAGGTCCCGTGGGTTTTACTTCTCAAATTGAGGAAGATTTT
VUK273D05.R VUK Phaseolus vulgaris genomic 3', genomic survey sequence.
JY811100.1:19-38
ACATAGTAGTGGAGACAT19TTTTTGGACTAGGTCCCGTGTTTTTTCATTTCTCAAGTTGAGGAAGTTTT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-06.
CP023118.1:15587249-15587268
TTATAATCCTACTTTCTATAGTAGAGATAT15587249TTTTTGGACTAGGTCCCGTGGTTGTTTCCTTCTCACATTGAGGAGGTTTT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-18.
CP023130.1:10117909-10117928
TTGTAATCCTACTTTCTATAGTGGATATAT10117909TTTTTGGACTAGGTCCCGTGATTGTTTCCTTCTCACATTGAGGAGGTTTT
Arachis hypogaea cultivar Shitouqi chromosome A04.
CP030986.1:114258329-114258348
ATGTACCCATTATTCTGATAGTGGAAGATT114258329TTTTTGGACTAGGTCCCGTGGATTTTTTTGTCCCTCTTTTGGGGATTTTT
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:147785804-147785823
GTGTACCCATTATTCTGATAGTGGAAGATT147785804TTTTTGGACTAGGTCCCGTGGGTATTTTGTCCCTCTTTTGGGGGATTTTT
Arachis hypogaea cultivar Shitouqi chromosome B02.
CP030994.1:19699977-19699996
TGTGTACCCATTATTTTGATAGTGGAAGAT19699977TTTTTGGACTAGGTCCCGTGGGTTTTTTTGTCCCTCTTTTGGGGGTTTTT
Arachis hypogaea cultivar Shitouqi chromosome B04.
CP030996.1:72018851-72018870
GTGTACCCATTATTCTGATAGTGGAAGATT72018851TTTTTGGACTAGGTCCCGTGGATTTTTTGTCCCTCTTTTGAGGGTTTTTC
Arachis hypogaea cultivar Shitouqi chromosome B06.
CP030998.1:31980478-31980497
GTGTACCCATTACTCTGATAGTGGAAGGTT31980478TTTTTGGACTAGGTCCCGTGGGTTTTTTGTCCCTCTTTTGGGGGTTTTTC
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:147777614-147777633
GTGTACCCATTATTCTGATAGTGGAAGATT147777614TTTTTGGACTAGGTCCCGTGGGTATTTTGTCCCTCTTTTGGGGGATTTTT
Arachis ipaensis cultivar K30076 chromosome 02.
CP049893.1:19932040-19932059
TGTGTACCCATTATTTTGATAGTGGAAGAT19932040TTTTTGGACTAGGTCCCGTGGGTTTTTTTGTCCCTCTTTTGGGGGTTTTT
Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:34757984-34758003
GTGTACCCATTATTCTGATAGTGGAAGATT34757984TTTTTGGACTAGGTCCCGTGGATTTTTTGTCCCTCTTTTGAGGGTTTTTC
Arachis ipaensis cultivar K30076 chromosome 06.
CP049897.1:28640875-28640894
GTGTACCCATTACTCTGATAGTGGAAGGTT28640875TTTTTGGACTAGGTCCCGTGGGTTTTTTGTCCCTCTTTTGGGGGTTTTTC
Canna indica chromosome 4.
CP136893.1:21407243-21407262
TGTACCTTGATTTGGTGATAGTGGAGTTTA21407243TTTTTGGACTAGGTCCCGTGGAGATTGCCTCTCGTTCTTTGAGAGGTACT
Canna indica chromosome 4.
CP136893.1:75246687-75246706
TGTACATTGATTTGGTGATAGTGGAGTTTA75246687TTTTTGGACTAGGTCCCGTGAAGATTGTCTCTTGTTCTTTTGAGAGATAT
Viscum album genome assembly, chromosome: 10_4.
OY728166.1:668926420-668926439
CCTGTACTTATCTATTTTAGTGGATCCCTC668926420TTTTTGGACTAGGTCCCGTGGTTTTTCCCTTTTGGGTTTTCCACGTAAAA
Viscum album genome assembly, chromosome: 10_4.
OY728166.1:1465339961-1465339980
CGTGTACTTATTCATTTTAGTGGATTACTC1465339961TTTTTGGACTAGGTCCCGTGGTTTTTCCCTTTCGGGTTTTCCACGTAAAA
Viscum album genome assembly, chromosome: B1.
OY728167.1:85372251-85372270
CCTGTACTTATCTATTTTAGTGGATCCCTC85372251TTTTTGGACTAGGTCCCGTGGTTTTTCCCTTTTGGGTTTTCCAAGTAAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACGGGACCTAGTCCAAAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACGGGACCTAGTCCAAAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.339 | 0.330 | search_plus_done; http://172.18.8.135:50400/match?q=CACGGGACCTAGTCCAAAAA&k=0&no_gap=0&offset=0&limit=50
0.798 | 0.458 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTTGGACTAGGTCCCGTG&k=0&no_gap=0&offset=0&limit=26
0.813 | 0.015 | cgi_end;

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