GGGenome | Results

2025-04-08 08:56:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

EST0370 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_22_87.M13+_G11.ab1, mRNA sequence.
FE861511.1:51-72

GATTGCTTCGGCAGAGGTTGAAGCGGCTCT51CACTACTCACCTCCTCGCACCTCTCATCTTCAGGTCTCTCTCTCTCTCTTGG

EST0372 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_07_14.M13+_F02.ab1, mRNA sequence.
FE861513.1:51-72

GATTGCTTCGGCAGAGGTTGAAGCGGCTCT51CACTACTCACCTCCTCGCACCTCTCATCTTCAGAAAACGGAGCAACAATGGC

EST0373 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_10_16.M13+_H02.ab1, mRNA sequence.
FE861514.1:51-72

GATTGCTTCGGCAGAGGTTGAAGCGGCTCT51CACTACTCACCTCCTCGCACCTCTCATCTTCAGAAAACGGAGCAACAATGGC

EST0374 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_09_06.M13+_F01.ab1, mRNA sequence.
FE861515.1:51-72

GATTGCTTCGGCAGAGGTTGAAGCGGCTCT51CACTACTCACCTCCTCGCACCTCTCATCTTCAGAAAACGGAGCAACAATGGC

Camellia sinensis mRNA, clone: YL21C02, 5' end sequence, expressed in young leaves.
FS960098.1:27-48

GCTTCGGCAGAGGTTGAAGCGGCTCT27CACTACTCACCTCCTCGCACCTCTCATCTTCAGAAAACGGAGCAACAATGGC

EST3096 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08012802-OUYI_CHAG_36_93.M13+_E12, mRNA sequence.
GE652769.1:51-72

GATTGCTTCGGCAGAGGTTGAAGCGGCTCT51CACTACTCACCTCCTCGCACCTCTCATCTTCAGAAAACGGAGCAACAATGGC

EST3432 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone OUYI_CG_86.M13+_F11, mRNA sequence.
GE653105.1:33-54

TCGGCCATTACGGCCGGGGGAAGCGGCTCT33CACTACTCACCTCCTCGCACCTCTCATCTTCAGGTCTCTCTCTCTCTCTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.815 | 0.806 | search_plus_done; http://172.18.8.135:50400/match?q=CACTACTCACCTCCTCGCACCT&k=0&no_gap=0&offset=0&limit=50
0.835 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=AGGTGCGAGGAGGTGAGTAGTG&k=0&no_gap=0&offset=0&limit=43
0.835 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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