GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:33:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Thalassophryne amazonica genome assembly, chromosome: 1.
LR722966.1:84564616-84564635
TGTGTGTGTGTGCTAATTGCTACACATTTC84564616CACTCAAACATAACAATCATCTGAACTCAGACTGCACATGTGAAAACACA
Scutellaria galericulata genome assembly, chromosome: 1.
OX335784.1:21841862-21841881
CACATAATATTAACTTATTACAGACATTTC21841862CACTCAAACATAACAATCATAAAAAAATGGGGGAAGATAAATATAAGTTC
Scutellaria minor genome assembly, chromosome: 2.
OX940726.1:22716943-22716962
CACATAATATTAACTTATTACAGACATTTC22716943CACTCAAACATAACAATCATAAAAGGGGGGGGGGGGGGAAGATAAATATA
Prehensilosergia prehensilis voucher HBG8513 ATP synthase subunit a (ATP6) gene, partial cds; mitochondrial.
MZ404942.1:196-215
TTAGAATTTAAAACTCTTCTAGGACCTCAA196CACTCAAACATAACAATCATATTTGTATCATTATTTAGACTTATTGTATT
Pammene fasciana genome assembly, chromosome: 6.
OU452278.1:11298837-11298856
GTGTTAAATTTCATTTGGTTTATAGTGTGA11298837CACTCAAACATAACAATCATAATTGGTTAGCATCCAATATCATTTGTTCA
Xylocampa areola genome assembly, chromosome: 15.
OW285214.1:2741480-2741499
CTAATAAAAAAGATAATTACAAACAGCATT2741480CACTCAAACATAACAATCATACAAAAACGCACAAACATTACTTAAGAAAC
Orthosia gracilis genome assembly, chromosome: Z.
OX387268.1:41020577-41020596
AAGAACCGTTTACGGTTTATCTGCGATACC41020577CACTCAAACATAACAATCATACAACCACACTAACATGCAAACATACGAAC
Clavelina lepadiformis genome assembly, chromosome: 7.
OX392445.1:13567143-13567162
ACATTCTACTTTCTTCTTTATCCTTGCGTG13567143CACTCAAACATAACAATCATGTGCTTTGCACTTGACCGGTTGCTTCTTCA
SDSS2_11 SDSS2 Camellia sinensis var. sinensis cDNA clone P11 5', mRNA sequence.
GH710840.1:222-241
ATTAGATCGAATTGAATTGAATTGAATTGA222ATGATTGTTATGTTTGAGTGAAGAAGAAACTGAGAAAAAAAAAAAAAAAA
Tea008_2005-10-27_1/Tea008_E05_020_1 Camellia sinensis (tea) cultivar DT1 EST library Camellia sinensis cDNA, mRNA sequence.
JK478812.1:176-195
ATTAGATCGAATTGAATTGAATTGAATTGA176ATGATTGTTATGTTTGAGTGAAGAAGAAACTGAGA
Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
AP015037.1:21026109-21026128
ATTGTTTATGATGAGTTTGGTATGTTTTGA21026109ATGATTGTTATGTTTGAGTGTTTTTGATTGATTTTATGTTGATTAAGGGA
Phorcus lineatus genome assembly, chromosome: 12.
OV121092.1:33999223-33999242
ATCAAGGACCTTGCCAGGAGATGCTAGAAA33999223ATGATTGTTATGTTTGAGTGTTTTTATGAGCGATTCCCTTAAGTTAACGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACTCAAACATAACAATCAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACTCAAACATAACAATCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.367 | 0.359 | search_plus_done; http://172.18.8.135:50400/match?q=CACTCAAACATAACAATCAT&k=0&no_gap=0&offset=0&limit=50
0.658 | 0.291 | search_minus_done; http://172.18.8.135:50400/match?q=ATGATTGTTATGTTTGAGTG&k=0&no_gap=0&offset=0&limit=42
0.661 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).