GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:04:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Ovis canadensis canadensis isolate 43U chromosome 3 sequence.
CP011888.1:125684527-125684546
CACAAAGAGTCGGACACGACTGAGCGACTT125684527CACTCACTCACTAGCAGTAATACTGGCACAATCCTCAGTAGCACGGATAT
Capricornis sumatraensis isolate serow.1 chromosome 4.
CP135629.1:63883863-63883882
TGCAAAGAGTCGGACACGACTGAGCGACTT63883863CACTCACTCACTAGCAGTAATACTGACATTATCCTCAGTAACACAGATAT
212c08 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN964546.1:23-42
ACTTTTACATAAGAGCTACATG23CACTCACTCACTAGCAGTAATACAATGTTAAAACAAATAGGATTACACAT
4d07w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN966119.1:21-40
TTTTACATAAGAGCTACATG21CACTCACTCACTAGCAGTAATACAATGTTAAAACAAATAGGATTACACAT
OL1319F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1319, mRNA sequence.
EH414385.1:5-24
CATG5CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAATAGGATTACA
0121130 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115818.1:30-49
CATGGAGTACTTTACATGAGAGCTACATG30CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAATAGGATTACA
0126673 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV121361.1:60-79
TCTGGAGTACTTCTACATGAGAGCTACATG60CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAATAGGATTACA
0206796 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV140867.1:27-46
TGGGATCTTTACATGAGAGCTACATG27CACTCACTCACTAGCAGTAATACAACGTTAAACAAACAAATAGGATTACA
0144205 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV167395.1:128-147
GCTGGAGTACTTTTACATAAGAGCTACATG128CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAATAGGATTACA
BR063137 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-019H10 5', mRNA sequence.
EX078493.1:58-77
GCTGGAGTACTTTTACATAAGAGCTACATG58CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAGTAGGATTACA
BR066008 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-061D03 5', mRNA sequence.
EX081364.1:6-25
ACATG6CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAGTAGGATTACA
BR105567 defected leaf cDNA library KHLD Brassica rapa subsp. pekinensis cDNA clone KHLD-30F12 3', mRNA sequence.
EX121737.1:75-94
GCTGGAGTACTTTTACATAAGAGCTACATG75CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAGTAGGATTACA
BR105857 defected leaf cDNA library KHLD Brassica rapa subsp. pekinensis cDNA clone KHLD-36E12 3', mRNA sequence.
EX122027.1:72-91
GCTGGAGTACTTTTACATAAGAGCTACATG72CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAGTAGGATTACA
BR113577 ovule and silique cDNA library KHOS Brassica rapa subsp. pekinensis cDNA clone KHOS-25B04 3', mRNA sequence.
EX129747.1:35-54
GCTGGAGTACTTTTACATAAGAGCTACATG35CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAGTAGGATTACA
BR114003 ovule and silique cDNA library KHOS Brassica rapa subsp. pekinensis cDNA clone KHOS-32G03 3', mRNA sequence.
EX130173.1:35-54
GCTGGAGTACTTTTACATAAGAGCTACATG35CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAGTAGGATTACA
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF31A11, 3'-end sequence.
FY423160.1:27-46
GAGTACTTTTACATAAGAGCTACATG27CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAGTAGGATTACA
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF44I01, 3'-end sequence.
FY427882.1:27-46
GAGTACTTTTACATAAGAGCTACATG27CACTCACTCACTAGCAGTAATACAATGTTAATTAAACAAGTAGGATTACA
BOHEQ56TF BOHE Brassica oleracea genomic clone BOHEQ56, genomic survey sequence.
BH570503.1:221-240
GCTGGAGTACTTTTACATAAGAGCTACATG221CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAATAGGATTACA
odf69b03.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH935086.1:481-500
GCTGGAGTACTTTTACATAAGAGCTACATG481CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAATAGGATTACA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:13602055-13602074
GCTGGAGTACTTTTACATAAGAGCTACATG13602055CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAGTAGGATTACA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:21801968-21801987
GCTGGAGTACTTTTACATGAGAGCTACATG21801968CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAATAGGATTACA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:12163373-12163392
GCTGGAGTACTTTTACATAAGAGCTACATG12163373CACTCACTCACTAGCAGTAATACAATGTTAAACAAACAAGTAGGATTACA
Brassica rapa genome, scaffold: A06.
LR031569.1:12093631-12093650
GCTGGAGTACTTTTACATAAGAGCTACATG12093631CACTCACTCACTAGCAGTAATACAATGTTAAAACAAATAGGATTACACAT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:12941555-12941574
GCTGGAGTACTTTTACATAAGAGCTACATG12941555CACTCACTCACTAGCAGTAATACAATGTTAAAACAAATAGGATTACACAT
Diarsia rubi genome assembly, chromosome: 9.
OW026420.1:1779402-1779421
AATAAGTGGTGTATCTCTTCAACAGCTCCA1779402CACTCACTCACTAGCAGTAATATTACTAGTAGCTACGAGTAATTGCAAAG
Sequence 3521 from patent US 9551006.
KH516091.1:1381-1400
TGTAATCCTATTTGTTTGTTTAACATTGTA1381TTACTGCTAGTGAGTGAGTGCATGTAGCTCTCATGTAAAAGTACTCCAGC
Sequence 3523 from patent US 9551006.
KH516093.1:1514-1533
TGTAATCCTACTTGTTTGTTTAACATTGTA1514TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
Sequence 3539 from patent US 9551006.
KH516109.1:1538-1557
TGTAATCCTATTTGTTTGTTTAACATTGTA1538TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
Sequence 3521 from patent US 10457952.
MO459267.1:1381-1400
TGTAATCCTATTTGTTTGTTTAACATTGTA1381TTACTGCTAGTGAGTGAGTGCATGTAGCTCTCATGTAAAAGTACTCCAGC
Sequence 3523 from patent US 10457952.
MO459269.1:1514-1533
TGTAATCCTACTTGTTTGTTTAACATTGTA1514TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
Sequence 3539 from patent US 10457952.
MO459285.1:1538-1557
TGTAATCCTATTTGTTTGTTTAACATTGTA1538TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a008I22_SP6.
AM058587.1:455-474
TGTAATCCTATTTGTTTGTTTAACATTGTA455TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
Brassica oleracea var. viridis mRNA, clone: KALE-085K03, 3' end sequence.
DK547877.1:728-747
TGTAATCCTATTTGTTTGTTTAACATTGTA728TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
Brassica oleracea var. viridis mRNA, clone: KALE-111M07, 3' end sequence.
DK557869.1:743-762
TGTAATCCTATTTGTTTGTTTAACATTGTA743TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
9RDBNGA_UP_164_E03_12MAR2006_023 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES957372.1:87-106
TGTAATCCTATTTGTTTGTTTAACATTGTA87TTACTGCTAGTGAGTGAGTGCATGTAGCTCTCATGTAAAAGTACTCCAGC
0207026 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV141097.1:600-619
TGTAATCCTATTTGTTTGTTTAACATTGTA600TTACTGCTAGTGAGTGAGTGCATGTAGCTCTCATGTAAAAGTACTCCAGC
0207446 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV141515.1:604-623
TGTAATCCTATTTGTTTGTTTAACATTGTA604TTACTGCTAGTGAGTGAGTGCATGTAGCTCTCATGTAAAAGTACTCCAGC
0213495 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV147561.1:515-534
TGTAATCCTATTTGTTTGTTTAACATTGTA515TTACTGCTAGTGAGTGAGTGCATGTAGCTCTCATGTAAAAGTACTCCAGC
BR010784 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-029H12 5', mRNA sequence.
EX026140.1:573-592
TGTAATCCTACTTGTTTGTTTAACATTGTA573TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAA
BR061222 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-056D01 5', mRNA sequence.
EX076578.1:778-797
TGTAATCCTACTTGTTTGTTTAACATTGTA778TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
BR114800 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-08C06 5', mRNA sequence.
EX130970.1:607-626
TGTAATCCTACTTGTTTGTTTAACATTGTA607TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
BR116160 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-19F01 5', mRNA sequence.
EX132330.1:498-517
TGTAATCCTACTTGTTTGTTTAACATTGTA498TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
BR119345 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-59C02 5', mRNA sequence.
EX135515.1:771-790
TGTAATCCTACTTGTTTGTTTAACATTGTA771TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
BR119512 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-61D06 5', mRNA sequence.
EX135682.1:672-691
TGTAATCCTACTTGTTTGTTTAACATTGTA672TTACTGCTAGTGAGTGAGTGCATGTTGCTCTTATGTAAAAGTACTCCAGC
224 Deletion-treated Brassica napus cDNA clone DR293, mRNA sequence.
H74879.1:157-176
ATGGTAATCCTATTGTTTGTTTAAATGGCA157TTACTGCTAGTGAGTGAGTGCATGTAGCTNTTATGTAAAAGTACT
Brassica napus cultivar Huyou15 mitogen-activated protein kinase 3 mRNA, complete cds.
AY642433.1:1381-1400
TGTAATCCTATTTGTTTGTTTAACATTGTA1381TTACTGCTAGTGAGTGAGTGCATGTAGCTCTCATGTAAAAGTACTCCAGC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:52784234-52784253
TGTAATCCTATTTGTTTGTTTAACATTGTA52784234TTACTGCTAGTGAGTGAGTGCATGTAGCTCTCATGTAAAAGTACTCCAGC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:53152191-53152210
TGTAATCCTATTTGTTTGTTTAACATTGTA53152191TTACTGCTAGTGAGTGAGTGCATGTAGCTCTTATGTAAAAGTACTCCAGC
Anania fuscalis genome assembly, chromosome: 16.
OX493341.1:16551861-16551880
TTAAAACAAAGGAGAGTAAAATTATATAAA16551861TTACTGCTAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGTGTGTGTGTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACTCACTCACTAGCAGTAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACTCACTCACTAGCAGTAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.302 | 1.293 | search_plus_done; http://172.18.8.135:50400/match?q=CACTCACTCACTAGCAGTAA&k=0&no_gap=0&offset=0&limit=50
2.342 | 1.040 | search_minus_done; http://172.18.8.135:50400/match?q=TTACTGCTAGTGAGTGAGTG&k=0&no_gap=0&offset=0&limit=25
2.358 | 0.016 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).