GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 13:47:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lutra lutra genome assembly, chromosome: 9.
LR738411.1:108717569-108717588
ACACTGGGAAGCGGATCTCAACAGAGGAAA108717569CACTGAAGCCACATGGCATAGAACCGCGTCTCTTCAGTCAGATTACAATG
Meles meles genome assembly, chromosome: 16.
OV277457.1:48005788-48005807
ACACTGGGCAGGGGATCTCAACAGAGGAAA48005788CACTGAAGCCACATGGCATAGAACCGCGTCTCTTCAGTCAGATTACAATG
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:2702732-2702751
AAGTCCAGCAAAATCATAATGTTTGGCAGC2702732CACTGAAGCCACATGGCATAAATCATACTGTTCCCCTCAGCTGCCCCAGC
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:2582298-2582317
AAGTCCAGCAAAATCATAATGTTTGGCAGC2582298CACTGAAGCCACATGGCATAAATCATACTGTTCCCCTCAGCTGCCCCAGC
Avena sativa genome assembly, chromosome: 6D.
OU342397.1:192961970-192961989
GATTTGAGATGTTTTGTGTTGAGAAGCTTC192961970CACTGAAGCCACATGGCATATGGGATCTCCCTTGACCAACTAGGTTTCAA
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:3120620-3120639
AAGTCCAGCAAAATCATAATGTTTGGCTGC3120620CACTGAAGCCACATGGCATAAATCATACTGTTCCCCTCAGCTACCCCAGC
Malus domestica genome assembly, chromosome: 2.
OU744543.1:3241830-3241849
AAGTCCAGCAAAATCATAATGTTTGGCAGC3241830CACTGAAGCCACATGGCATAAATCATACTGTTCCCCTCAGCTACCCCAGC
Malus domestica genome assembly, chromosome: 2.
OU744954.1:3289651-3289670
AAGTCCAGCAAAATCATAATGTTTGGCAGC3289651CACTGAAGCCACATGGCATAAATCATACTGTTCCCCTCAGCTACCCCAGC
Avena sativa genome assembly, chromosome: 20.
OV702298.1:200283656-200283675
GATTTGAGATGTTTTGTGTTGAGAAGCTTC200283656CACTGAAGCCACATGGCATATGGGATCTCCCTTGACCAACTAGGTTTCAA
Onychomys leucogaster genome assembly, chromosome: 19.
OX460389.1:6207720-6207739
AAACAATTGATTACAAAAGTGTGCTTATGG6207720TATGCCATGTGGCTTCAGTGGGAATGCGGAAGTTAAAACAGAAGCAACAA
Onychomys leucogaster genome assembly, chromosome: 19.
OX460436.1:11242158-11242177
AAACAATTGATTACAAAAGTGTGCTTATGG11242158TATGCCATGTGGCTTCAGTGGGAATGCGGAAGTTAAAAGAGAAGCAACAA
Martes martes genome assembly, chromosome: 9.
OY734071.1:34139238-34139257
CATTGTAATCTGACTGAAGAGACGCGGTTC34139238TATGCCATGTGGCTTCAGTGTTTCCTCTGTTGAGATCCCCTGCCCAGTGT
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:32976305-32976324
GCTGGGGTAGCTGAGGGGAACAGTATGATT32976305TATGCCATGTGGCTTCAGTGGCTGCCAAACATTAAGATTTTGCTGGACTT
Malus x domestica clone Florina BAC 36I17, complete sequence.
GU295057.1:69320-69339
GCTGGGGTAGCTGAGGGGAACAGTATGATT69320TATGCCATGTGGCTTCAGTGGCTGCCAAACATTATGATTTTGCTGGACTT
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:33934105-33934124
GCTGGGGCAGCTGAGGGGAACAGTATGATT33934105TATGCCATGTGGCTTCAGTGGCTGCCAAACATTATGATTTTGCTGGACTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACTGAAGCCACATGGCATA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACTGAAGCCACATGGCATA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.101 | 0.092 | search_plus_done; http://172.18.8.135:50400/match?q=CACTGAAGCCACATGGCATA&k=0&no_gap=0&offset=0&limit=50
0.127 | 0.026 | search_minus_done; http://172.18.8.135:50400/match?q=TATGCCATGTGGCTTCAGTG&k=0&no_gap=0&offset=0&limit=41
0.131 | 0.004 | cgi_end;

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