GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 08:56:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Cannabis sativa PK17728.1_1.CasaPuKu mRNA sequence.
JP449592.1:2087-2106
TTGGCCAACAAAAGAATCAAGAAATAAACT2087TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCTATTGATGAAGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq2.
LA411033.1:2299-2318
TTGGCCAACAAAAGAATGAAGAAATAAACT2299TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq5.
LA411034.1:1042-1061
TTGGCCAACAAAAGAATGAAGAAATAAACT1042TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq7.
LA411036.1:1401-1420
TTGGCCAACAAAAGAATGAAGAAATAAACT1401TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq12.
LA411040.1:2299-2318
TTGGCCAACAAAAGAATGAAGAAATAAACT2299TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq18.
LA411046.1:1884-1903
TTGGCCAACAAAAGAATGAAGAAATAAACT1884TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq19.
LA411047.1:1525-1544
TTGGCCAACAAAAGAATGAAGAAATAAACT1525TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq20.
LA411048.1:1816-1835
TTGGCCAACAAAAGAATGAAGAAATAAACT1816TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq21.
LA411049.1:1884-1903
TTGGCCAACAAAAGAATGAAGAAATAAACT1884TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq22.
LA411050.1:1042-1061
TTGGCCAACAAAAGAATGAAGAAATAAACT1042TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq23.
LA411051.1:1816-1835
TTGGCCAACAAAAGAATGAAGAAATAAACT1816TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq30.
LA411057.1:1161-1180
TTGGCCAACAAAAGAATGAAGAAATAAACT1161TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq32.
LA411058.1:1401-1420
TTGGCCAACAAAAGAATGAAGAAATAAACT1401TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq35.
LA411061.1:1525-1544
TTGGCCAACAAAAGAATGAAGAAATAAACT1525TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq36.
LA411062.1:1110-1129
TTGGCCAACAAAAGAATGAAGAAATAAACT1110TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq39.
LA411065.1:627-646
TTGGCCAACAAAAGAATGAAGAAATAAACT627TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq44.
LA411069.1:387-406
TTGGCCAACAAAAGAATGAAGAAATAAACT387TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq46.
LA411070.1:627-646
TTGGCCAACAAAAGAATGAAGAAATAAACT627TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp282550_c0_seq51.
LA411074.1:1110-1129
TTGGCCAACAAAAGAATGAAGAAATAAACT1110TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT
Camelina sativa cultivar CO46 chromosome 7.
CP131556.1:28662408-28662427
TCTGTCAAGTTGGTTTCTGAACCTAAACCA28662408TGGAGGATGTCTCATCAGTGGTATGAGAAGCATCAGAAGATGATTGCACT
Humulus lupulus genome assembly, chromosome: X.
OY720650.1:8780664-8780683
TTGGCCAACAAAAGAATGAAGAAATAAACT8780664TGGAGGATGTCTCATCAGTGTTGAATCAACTTGCTTCCATTGATGAGGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACTGATGAGACATCCTCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACTGATGAGACATCCTCCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.104 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=CACTGATGAGACATCCTCCA&k=0&no_gap=0&offset=0&limit=50
0.473 | 0.369 | search_minus_done; http://172.18.8.135:50400/match?q=TGGAGGATGTCTCATCAGTG&k=0&no_gap=0&offset=0&limit=50
0.487 | 0.013 | cgi_end;

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