GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 16:59:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES06H12, 5' end sequence.
FY384540.1:288-307
ATCCGAACCCAGAAGCTTCAGCTTCAGAAC288CACTTACGCCGTCTCAACAAACCTTCTGTCAAAACTATTCGGAGCCCAGA
Dianthus caryophyllus mRNA, clone: CES31E09, 5' end sequence.
FY393890.1:287-306
ATCCGAACCCAGAAGCTTCAGCTTCAGAAC287CACTTACGCCGTCTCAACAAACCTTCTGTCAAAACTATTCGGAGCCCAGA
Dianthus caryophyllus mRNA, clone: CFES11N06, 5' end sequence.
FY398261.1:302-321
ATCCGAACCCAGAAGCTTCAGCTTCAGAAC302CACTTACGCCGTCTCAACAAACCTTCTGTCAAAACTATTCGGAGCCCAGA
Dianthus caryophyllus mRNA, clone: CFES12D04, 5' end sequence.
FY398399.1:239-258
ATCCGAACCCAGAAGCTTCAGCTTCAGAAC239CACTTACGCCGTCTCAACAAACCTTCTGTCAAAACTATTCGGAGCCCAGA
Dianthus caryophyllus mRNA, clone: CFES15_P21, 5' end sequence.
FY399836.1:221-240
ATCCGAACCCAGAAGCTTCAGCTTCAGAAC221CACTTACGCCGTCTCAACAAACCTTCTGTCAAAACTATTCGGAGCCCAGA
Dianthus caryophyllus mRNA, clone: CFES20_B02, 5' end sequence.
FY401359.1:327-346
ATCCGAACCCAGAAGCTTCAGCTTCAGAAC327CACTTACGCCGTCTCAACAAACCTTCTGTCAAAACTATTCGGAGCCCAGA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.516.C1.
FX297531.1:328-347
ATCCGAACCCAGAAGCTTCAGCTTCAGAAC328CACTTACGCCGTCTCAACAAACCTTCTGTCAAAACTATTCGGAGCCCAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CACTTACGCCGTCTCAACAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CACTTACGCCGTCTCAACAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.031 | 1.021 | search_plus_done; http://172.18.8.135:50400/match?q=CACTTACGCCGTCTCAACAA&k=0&no_gap=0&offset=0&limit=50
1.051 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTTGAGACGGCGTAAGTG&k=0&no_gap=0&offset=0&limit=43
1.051 | 0.000 | cgi_end;

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