GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 05:44:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:34687732-34687751
CAATGTTATTACACATTTGAACGACTTGTG34687732CAGACCTATTACACCCTCCACACCATCACATAAGAAATATGTATTTGTTC
KBrH104J14R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH104J14, genomic survey sequence.
DU128237.1:184-203
GAACAAATACATATTTCTTATGTGATGGTG184TGGAGGGTGTAATAGGTCTGCACAAGTCGTTCAAATGTGTAATAACATTG
KBrB129J04F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB129J04, genomic survey sequence.
ED536623.1:593-612
GAACAAATACATATTTCTTATGTGATGGTG593TGGAGGGTGTAATAGGTCTGCACAAGTCGTTCAAATGTGTAATAACATTG
Brassica napus genome assembly, chromosome: A07.
HG994361.1:1792674-1792693
GAACAAATACATATTTCTTATGTGATGGTG1792674TGGAGGGTGTAATAGGTCTGCACAAGTCGTTCAAATGTGTAATAACATTG
Brassica rapa genome, scaffold: A07.
LR031574.1:1763727-1763746
GAACAAATACATATTTCTTATGTGATGGTG1763727TGGAGGGTGTAATAGGTCTGCACAGGTCGTTCAAATGTGTAATAACATTG
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:1774632-1774651
GAACAAATACATATTTCTTATGTGATGGTG1774632TGGAGGGTGTAATAGGTCTGCACAGGTCGTTCAAATGTGTAATAACATTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGACCTATTACACCCTCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGACCTATTACACCCTCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=CAGACCTATTACACCCTCCA&k=0&no_gap=0&offset=0&limit=50
0.159 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=TGGAGGGTGTAATAGGTCTG&k=0&no_gap=0&offset=0&limit=49
0.162 | 0.004 | cgi_end;

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