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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 18:55:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR2AB44JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV540384.1:446-467
GCTTACGGTAAGCAGCGCGGACATCGGAGA446CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCTAACGTT
RR2B380JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV542300.1:669-690
GCTTACGGTAAGCAGCGCGGACATCGGAGA669CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCT
RR4AP39JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EV572585.1:498-519
GCTTACGGTAAGCAGCGCGGACATCGGAAA498CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCTAACGTT
RS2AX88JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW729964.1:546-567
GCTTACGGTAAGCAGCGCGGACATCGGAAA546CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCTAACGTT
RS3AR36JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW737648.1:515-536
GCTTACGGTAAGCAGCGCGGACATCGGAAA515CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCTAACGTT
RS3AR48JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW737656.1:544-565
GCTTACGGTAAGCAGCACGGACATCGGAGA544CAGAGGCATCTTTCCGAATACCGAGGACGTTAGTAGCTAGATCTAACGTTGG
RS3AR79JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW737682.1:515-536
GCTTACGGTAAGCAGCGCGGACATCGGAAA515CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCTAACGTT
RR2CO50JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX761033.1:544-565
GCTTACGGTAAGCAGCGCGGACATCGGAGA544CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCTAACGTT
RR3CW81JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX769615.1:556-577
GCTTACGGTAAGCAGCGCGGACATCGGAGA556CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCTAACGTT
RR4BN62JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX774334.1:558-579
GCTTACGGTAAGCAGCGCGGACATCGGAAA558CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCTAACGTT
RR3D212JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY909327.1:619-640
GCTTACGGTAAGCAGCGCGGACATCGGAAA619CAGAGGCATCTTTCCGAATACCGAGGACGTTGT
RR4EE57JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY920965.1:570-591
GCTTACGGTAAGCAGCGCGGACATCGGAAA570CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCTAACGTT
RS3EI49JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD581206.1:555-576
GCTTACGGTAAGCAGCGCGGACATCGGAAA555CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCTAACGTT
RS2HD02JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD945286.1:568-589
GCTTACGGTAAGCAGCGCGGACATCGGAAA568CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCAAACGTT
TSA: Raphanus sativus RS13632 mRNA sequence.
JT798179.1:560-581
GCTTACGGTAAGCAGCGCGGACATCGGAAA560CAGAGGCATCTTTCCGAATACCGAGGACGTTGTAGTAGCTAGATCTAACGTT
RR2AB44TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV535797.1:248-269
AACGTTAGATCTAGCTACTACAACGTCCTC248GGTATTCGGAAAGATGCCTCTGTCTCCGATGTCCGCGCTGCTTACCGTAAGC
RR2B380TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV538238.1:243-264
AACGTTAGATCTAGCTACTACAACGTCCTC243GGTATTCGGAAAGATGCCTCTGTCTCCGATGTCCGCGCTGCTTACCGTAAGC
RR4AP39TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV567703.1:168-189
AACGTTAGATCTAGCTACTACAACGTCCTC168GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
RS2AX88TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW725319.1:231-252
AACGTTAGATCTAGCTACTACAACGTCCTC231GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
RS3AR36TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW733512.1:241-262
AACGTTAGATCTAGCTACTACAACGTCCTC241GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
RS3AR48TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW733523.1:248-269
CCAACGTTAGATCTAGCTACTAACGTCCTC248GGTATTCGGAAAGATGCCTCTGTCTCCGATGTCCGTGCTGCTTACCGTAAGC
RS3AR79TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW733553.1:246-267
AACGTTAGATCTAGCTACTACAACGTCCTC246GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
RR2CO50TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX757445.1:216-237
AACGTTAGATCTAGCTACTACAACGTCCTC216GGTATTCGGAAAGATGCCTCTGTCTCCGATGTCCGCGCTGCTTACCGTAAGC
RR3CW81TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX765903.1:207-228
AACGTTAGATCTAGCTACTACAACGTCCTC207GGTATTCGGAAAGATGCCTCTGTCTCCGATGTCCGCGCTGCTTACCGTAAGC
RR2EC65TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY908890.1:229-250
AACGTTAGATCTAGCTACTACAACGTCCTC229GGTATTCGGAAAGATGCCTCTGTCTCCGATGTCCGCGCTGCTTACCGTAAGC
RR3D212TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY913016.1:174-195
AACGTTAGATCTAGCTACTACAACGTCCTC174GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
RR4EE57TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY925503.1:261-282
AACGTTAGATCTAGCTACTACAACGTCCTC261GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
RR2FD05TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD542773.1:327-348
AACGTTAGATCTAGCTACTACAACGTCCTC327GGTATTCGGAAAGATGCCTCTGTCTCCGATGTCCGCGCTGCTTACCGTAAGC
RS3EI49TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD576783.1:145-166
AACGTTAGATCTAGCTACTACAACGTCCTC145GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
RS2HD02TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD949668.1:338-359
AACGTTTGATCTAGCTACTACAACGTCCTC338GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
RR2G382TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD970497.1:225-246
AACGTTAGATCTAGCTACTACAACGTCCTC225GGTATTCGGAAAGATGCCTCTGTCTCCGATGTCCGCGCTGCTTACCGCTCGC
RR2GQ69TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD972498.1:246-267
AACGTTAGATCTAGCTACTACAACGTCCTC246GGTATTCGGAAAGATGCCTCTGTCTCCGATGTCCGCGCTGCTTACCGTAAGC
RR3FW61TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD978059.1:94-115
AACGTTAGATCTAGCTACTACAACGTCCTC94GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
RR3FX72TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD978159.1:136-157
AACGTTAGATCTAGCTACTACAACGTCCTC136GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
RR3GL58TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD980214.1:136-157
AACGTTAGATCTAGCTACTACAACGTCCTC136GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_20836.
FX667401.1:324-345
AACGTTAGATCTAGCTACTACAACGTCCTC324GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_34423.
FX764037.1:230-251
AACGTTAGATCTAGCTACTACAACGTCCTC230GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:9614109-9614130
AACGTTAGATCTAGCTACTACAACGTCCTC9614109GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:9614109-9614130
AACGTTAGATCTAGCTACTACAACGTCCTC9614109GGTATTCGGAAAGATGCCTCTGTTTCCGATGTCCGCGCTGCTTACCGTAAGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGAGGCATCTTTCCGAATACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGAGGCATCTTTCCGAATACC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.248 | 1.240 | search_plus_done; http://172.18.8.135:50400/match?q=CAGAGGCATCTTTCCGAATACC&k=0&no_gap=0&offset=0&limit=50
2.582 | 1.334 | search_minus_done; http://172.18.8.135:50400/match?q=GGTATTCGGAAAGATGCCTCTG&k=0&no_gap=0&offset=0&limit=35
2.597 | 0.016 | cgi_end;

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