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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 20:59:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR1AN08TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV526440.1:37-56
AAGAAGAGGAAGAAGAAGAAGAAGAAGAAG37CAGAGGTTCTTGGAGTGGGAGAGCTTGCTTCGGGAACAGACGGAGGAGGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8904.
FX658028.1:1253-1272
AAGAAGAGGAAGAAGAAGAAGAAGAAGAAG1253CAGAGGTTCTTGGAGTGGGAGAGCTTGCTTCGGGAACAGACGGAGGAGGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_14981.
FX791752.1:1252-1271
AAGAAGAGGAAGAAGAAGAAGAAGAAGAAG1252CAGAGGTTCTTGGAGTGGGAGAGCTTGCTTCGGGAACAGACGGAGGAGGA
TSA: Raphanus sativus RS15794 mRNA sequence.
JT800341.1:1284-1303
AAGAAGAGGAAGAAGAAGAAGAAGAAGAAG1284CAGAGGTTCTTGGAGTGGGAGAGCTTGCTTCGGGAACAGACGGAGGAGGA
Sambucus nigra genome assembly, chromosome: 12.
OX422218.1:524836988-524837007
AAGGGACTATATCTTCACTATCCTCTCTAC524836988CAGAGGTTCTTGGAGTGGGACCTTAAATTACTCTTTAGGGGTTCTTTTAG
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:44094722-44094741
AAGAAGAGGAAGAAGAAGAAGAAGAAGAAG44094722CAGAGGTTCTTGGAGTGGGAGAGCTTGCTTCGGGAACAGACGGAGGAGGA
Thellungiella halophila cDNA clone: RTFL01-12-N20, 5'end sequence.
BY808376.1:550-569
GCCTCCACCATCTGTGACTCTTGCAAACTC550TCCCACTCCAAGAACCTCTGGTTCTTCTTCAGTGGTTGTTCCTGTAGTGG
Thellungiella halophila cDNA clone: RTFL01-14-L12, 5'end sequence.
BY809694.1:540-559
GCCTCCACCATCTGTGACTCTTGCAAACTC540TCCCACTCCAAGAACCTCTGGTTCTTCTTCAGTGGTTGTTCCTGTAGTGG
E4841 [C1004|cld11_d08] Cold Library Eutrema salsugineum cDNA, mRNA sequence.
DN774826.1:608-627
GCCTCCACCATCTGTGACTCTTGCAAACTC608TCCCACTCCAAGAACCTCTGGTTCTTCTTCAGTGGTTGTTCCTGTAGTGG
RS1B052TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW717092.1:80-99
TCCTCCTCCGCCTGTGCCTCTTGCAAGCTC80TCCCACTCCAAGAACCTCTGCTTCTTCTTCTTCTTCCTCTTCTTCAGTGG
RR3DY77TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY915826.1:130-149
TCCTCCTCCGTCTGTTCCCGAAGCAAGCTC130TCCCACTCCAAGAACCTCTGCTTCTTCTTCTTCTTCTTCTTCCTCTTCTT
RS2EJ57TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY941554.1:588-607
TCCTCCTCCGTCTGTGCCTCTTGCAAGCTC588TCCCACTCCAAGAACCTCTGCTTCTTCTTCTTCTTCCTCTTCTTCAGTGG
RR2GM26TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD972126.1:487-506
TCCTCCTACGTCTGTGCCTCTTGCAAACTC487TCCCACTCCAAGAACCTCTGCTTCTTCCTCTTCTTCTTCCTCTTCTTCAG
Raphanus sativus mRNA, clone: RSCS15L16, 5' end sequence.
FY451335.1:515-534
TCCTCCTCCGTCTGTTCCCGAAGCAAGCTC515TCCCACTCCAAGAACCTCTGCTTCTTCTTCTTCTTCTTCTTCCTCTTCTT
Raphanus sativus mRNA, clone: RSCS22F12, 5' end sequence.
FY453713.1:127-146
TCCTCCTCCGTCTGTTCCCGAAGCAAGCTC127TCCCACTCCAAGAACCTCTGCTTCTTCTTCTTCTTCTTCTTCCTCTTCTT
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:9555779-9555798
TCCTCCTCCGTCTGTTCCCGAAGCAAGCTC9555779TCCCACTCCAAGAACCTCTGCTTCTTCTTCTTCTTCTTCTTCCTCTTCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGAGGTTCTTGGAGTGGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGAGGTTCTTGGAGTGGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.216 | 0.207 | search_plus_done; http://172.18.8.135:50400/match?q=CAGAGGTTCTTGGAGTGGGA&k=0&no_gap=0&offset=0&limit=50
0.825 | 0.609 | search_minus_done; http://172.18.8.135:50400/match?q=TCCCACTCCAAGAACCTCTG&k=0&no_gap=0&offset=0&limit=44
0.832 | 0.007 | cgi_end;

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