GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:53:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Coregonus sp. 'balchen' genome assembly, chromosome: 32.
LR778284.1:30950276-30950295
TCATCTATTGATCTTTTACTTCTTATTAGT30950276CAGATGCCAACCCACAAACATTTTTTTAAGGGGTAGATCAGCTTTAATAT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18707905-18707924
AAGGCAACTAGCGAAAAGCCGAAGAACAGA18707905CAGATGCCAACCCACAAACAATGGAGGTCCATGAATTCGGAACCACGAAA
TSA: Pyrus pyrifolia mRNA, contig: contig_25389.
FX402803.1:98-117
TTTCGTGGTTCCGAATTCATGGACCTCCAT98TGTTTGTGGGTTGGCATCTGTCTGTTCTTCGGCTTTTCGCTAGTCGCCTT
TSA: Pyrus x bretschneideri Unigene60552_XinShao mRNA sequence.
JR648719.1:58-77
TTTCGTGGTTCCGAATTCATGGACCTCCAT58TGTTTGTGGGTTGGCATCTGTCTGTTCTTCGGCTTTTCGCTAGTTGCCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGATGCCAACCCACAAACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGATGCCAACCCACAAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=CAGATGCCAACCCACAAACA&k=0&no_gap=0&offset=0&limit=50
0.156 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTTGTGGGTTGGCATCTG&k=0&no_gap=0&offset=0&limit=48
0.158 | 0.002 | cgi_end;

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