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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:44:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

OSJNEd04K21.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd04K21 5', mRNA sequence.
CB661583.1:524-545
ATACTTGCAAGGTATTTGCTGTAGGTGATG524CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
AdH1146-CPY2-H18TR AdH1 Arachis duranensis genomic clone AdH1146-CPY2-H18, genomic survey sequence.
FI297108.1:607-628
GCGTTTTAAGGAGTGATGGTCCATAGAGAA607CAGCAAACAGCTAAGCTCAGAAGTATGTAAATGTGTGTTTTCTCTGACTTAT
AdH1162-CPY2-J4TR AdH1 Arachis duranensis genomic clone AdH1162-CPY2-J4, genomic survey sequence.
FI314409.1:605-626
GCGTTTTAAGGAGTGATGGTCCATAGAGAA605CAGCAAACAGCTAAGCTCAGAAGTATGTAAATGTGTGTTTTCTCTGACTTAT
Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09.
AL731628.4:57130-57151
ATACTTGCAAGGTATTTGCTGTAGGTGATG57130CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
AP014960.1:20945103-20945124
ATACTTGCAAGGTATTTGCTGTAGGTGATG20945103CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 4.
AP027388.1:19145846-19145867
ATACTTGCAAGGTATTTGCTGTAGGTGATG19145846CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
CP012612.1:17493446-17493467
ATACTTGCAAGGTATTTGCTGTAGGTGATG17493446CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Oryza sativa Indica Group cultivar Shuhui498 chromosome 4, partial sequence.
CP018160.1:21022141-21022162
ATACTTGCAAGGTATTTGCTGTAGGTGATG21022141CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:7097602-7097623
GCGTTTTAAGGAGTGATGGTCCATAGAGAA7097602CAGCAAACAGCTAAGCTCAGAAGTATGTAAATGTGTGTTTTCTCTGACTTAT
Oryza sativa Indica Group cultivar Minghui 63 chromosome 4.
CP054679.1:22608300-22608321
ATACTTGCAAGGTATTTGCTGTAGGTGATG22608300CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Oryza sativa Indica Group cultivar Zhenshan 97 chromosome 4.
CP056055.1:22347579-22347600
ATACTTGCAAGGTATTTGCTGTAGGTGATG22347579CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Oryza sativa Japonica Group cultivar Changxianggeng 1813 chromosome 10.
CP101150.1:20532318-20532339
ATACTTGCAAGGTATTTGCTGTAGGTGATG20532318CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Oryza sativa Japonica Group cultivar Nipponbare isolate AGIS-1.0 chromosome 4.
CP132238.1:21343559-21343580
ATACTTGCAAGGTATTTGCTGTAGGTGATG21343559CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Oryza sativa indica subgroup cultivar ZH8015 chromosome 04.
CP141111.1:22808361-22808382
ATACTTGCAAGGTATTTGCTGTAGGTGATG22808361CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0076I14.
CR855106.1:27915-27936
ATACTTGCAAGGTATTTGCTGTAGGTGATG27915CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Oryza sativa genome assembly, chromosome: 4.
OX637249.1:15561733-15561754
ATACTTGCAAGGTATTTGCTGTAGGTGATG15561733CAGCAAACAGCTAAGCTCAGAATGCACTCTTTCTGTTGCTCGATGAGAGTTG
Sequence 2199 from Patent WO2003008540.
HA100568.1:1754-1775
CAACTCTCATCGAGCAACAGAAAGAGTGCA1754TTCTGAGCTTAGCTGTTTGCTGCATCACCTACAGCAAATACCTTGCAAGATC
JP 2005185101-A/14789: Full length cDNA of plant and the use thereof.
HV079911.1:1984-2005
CAACTCTCATCGAGCAACAGAAAGAGTGCA1984TTCTGAGCTTAGCTGTTTGCTGCATCACCTACAGCAAATACCTTGCAAGTAT
JP 2005185101-A/25058: Full length cDNA of plant and the use thereof.
HV090180.1:1855-1876
CAACTCTCATCGAGCAACAGAAAGAGTGCA1855TTCTGAGCTTAGCTGTTTGCTGCATCACCTACAGCAAATACCTTGCAAGTAT
Oryza sativa Japonica Group cDNA, clone: J02B3099G24M3, 3'end of J023099G24.
CI356965.1:82-103
CAACTCTCATCGAGCAACAGAAAGAGTGCA82TTCTGAGCTTAGCTGTTTGCTGCATCACCTACAGCAAATACCTTGCAAGTAT
OR_CBa0026E14.r OR_CBa Oryza rufipogon genomic clone OR_CBa0026E14 3', genomic survey sequence.
CL810944.1:674-695
CAACTCTCATCGAGCAACAGAAAGAGTGCA674TTCTGAGCTTAGCTGTTTGCTGCATCACCTACAGCAAATACCTTGCAAGTAT
OR_CBa0040K05.f OR_CBa Oryza rufipogon genomic clone OR_CBa0040K05 5', genomic survey sequence.
CL821632.1:662-683
CAACTCTCATCGAGCAACAGAAAGAGTGCA662TTCTGAGCTTAGCTGTTTGCTGCATCACCTACAGCAAATACCTTGCAAGTAT
OR_CBa0053D19.f OR_CBa Oryza rufipogon genomic clone OR_CBa0053D19 5', genomic survey sequence.
CL830989.1:648-669
CAACTCTCATCGAGCAACAGAAAGAGTGCA648TTCTGAGCTTAGCTGTTTGCTGCATCACCTACAGCAAATACTTTGCCAGTAT
Arachis hypogaea DNA, clone: 8iHA00A06, cultivar: YI-0311.
DE998444.1:526-547
ATAAGTCAGAGAAAACACACATTTACATAC526TTCTGAGCTTAGCTGTTTGCTGTTCTCTATGGACCATCACTCCTTAAAACGC
Arachis hypogaea DNA, clone: KIAC08M03.
DH965425.1:516-537
ATAAGTCAGAGAAAACACACATTTACATAC516TTCTGAGCTTAGCTGTTTGCTGTTCTCTATGGACCATCACTCCTTAAAACGC
Oryza sativa Japonica Group cDNA clone:J013000M22, full insert sequence.
AK065331.1:1984-2005
CAACTCTCATCGAGCAACAGAAAGAGTGCA1984TTCTGAGCTTAGCTGTTTGCTGCATCACCTACAGCAAATACCTTGCAAGTAT
Oryza sativa Japonica Group cDNA clone:J023099G24, full insert sequence.
AK100500.1:1855-1876
CAACTCTCATCGAGCAACAGAAAGAGTGCA1855TTCTGAGCTTAGCTGTTTGCTGCATCACCTACAGCAAATACCTTGCAAGTAT
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:7893613-7893634
ATAAGTCAGAGAAAACACACATTTACATAC7893613TTCTGAGCTTAGCTGTTTGCTGTTCTCTATGGACCATCACTCCTTAAAACGC
Arachis ipaensis cultivar K30076 chromosome 03.
CP049894.1:7829704-7829725
ATAAGTCAGAGAAAACACACATTTACATAC7829704TTCTGAGCTTAGCTGTTTGCTGTTCTCTATGGACCATCACTCCTTAAAACGC
UNVERIFIED: Oryza sativa Indica Group cultivar At 354 filaggrin-2-like gene, complete sequence.
MK492740.1:3758-3779
CAACTCTCATCGAGCAACAGAAAGAGTGCA3758TTCTGAGCTTAGCTGTTTGCTGCATCACCTACAGCAAATACCTTGCAAGTAT
Oryza sativa Indica Group cultivar Bg 352 filaggrin-2 gene, complete cds.
MK492741.1:3758-3779
CAACTCTCATCGAGCAACAGAAAGAGTGCA3758TTCTGAGCTTAGCTGTTTGCTGCATCACCTACAGCAAATACCTTGCAAGTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGCAAACAGCTAAGCTCAGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCAAACAGCTAAGCTCAGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.204 | 0.195 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCAAACAGCTAAGCTCAGAA&k=0&no_gap=0&offset=0&limit=50
0.457 | 0.253 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTGAGCTTAGCTGTTTGCTG&k=0&no_gap=0&offset=0&limit=34
0.467 | 0.010 | cgi_end;

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