GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:17:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

B.napus ACP05 genomic clone.
A26254.1:1319-1338
ATGTTTTGTTGTATTGATGGAACAAACAGG1319CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
Sequence 46 from patent US 7053267.
AR884943.1:1836-1855
ATGTTTTGTTGTATTGATGGAACAAACAGG1836CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
Sequence 28 from patent US 7572926.
GP513266.1:1836-1855
ATGTTTTGTTGTATTGATGGAACAAACAGG1836CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
Sequence 4 from patent US 5608152.
I36845.1:1463-1482
ATGTTTTGTTGTATTGATGGAACAAACAGG1463CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
Sequence 28 from patent US 5723595.
I90202.1:1836-1855
ATGTTTTGTTGTATTGATGGAACAAACAGG1836CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
BN20.041I19F011126 BN20 Brassica napus cDNA clone BN20041I19, mRNA sequence.
CD817332.1:115-134
CTTCCGTCTCCATGCAAGCCACTTCTCTGG115CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
BN20.050O14F011221 BN20 Brassica napus cDNA clone BN20050O14, mRNA sequence.
CD820036.1:103-122
CCTCTGTCTCCATGCAAGCCACTTCTCTGG103CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN25.040J24F011026 BN25 Brassica napus cDNA clone BN25040J24, mRNA sequence.
CD821034.1:117-136
CTTCCGTCTCCATGCAAGCCACTTCTCTGG117CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTGGGTTTCAAGGACT
BN25.043C21F011128 BN25 Brassica napus cDNA clone BN25043C21, mRNA sequence.
CD821837.1:113-132
CCTCTGTCTCCATGCAAGCCACTTCTCTGG113CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN25.043E23F011128 BN25 Brassica napus cDNA clone BN25043E23, mRNA sequence.
CD821883.1:106-125
CCTCTGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN25.043F21F011129 BN25 Brassica napus cDNA clone BN25043F21, mRNA sequence.
CD821900.1:106-125
CTTCCGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
BN25.044C05F011128 BN25 Brassica napus cDNA clone BN25044C05, mRNA sequence.
CD822130.1:106-125
CCTCTGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN25.044F11F011129 BN25 Brassica napus cDNA clone BN25044F11, mRNA sequence.
CD822193.1:106-125
CTTCCGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
BN25.046O21F020108 BN25 Brassica napus cDNA clone BN25046O21, mRNA sequence.
CD822883.1:104-123
CCTCTGTCTCCATGCAAGCCACTTCTCTGG104CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN25.048K05F020110 BN25 Brassica napus cDNA clone BN25048K05, mRNA sequence.
CD823395.1:113-132
CCTCTGTCTCCATGCAAGCCACTTCTCTGG113CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN25.050H06F020110 BN25 Brassica napus cDNA clone BN25050H06, mRNA sequence.
CD823930.1:105-124
CCTCTGTCTCCATGCAAGCCACTTCTCTGG105CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN25.051N16F020121 BN25 Brassica napus cDNA clone BN25051N16, mRNA sequence.
CD824175.1:105-124
CCTCTGTCTCCATGCAAGCCACTTCTCTGG105CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN25.053G08F020327 BN25 Brassica napus cDNA clone BN25053G08, mRNA sequence.
CD824380.1:113-132
CCTCTGTCTCCATGCAAGCCACTTCTCTGG113CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN40.040G13F011019 BN40 Brassica napus cDNA clone BN40040G13, mRNA sequence.
CD828920.1:113-132
CCTCTGTCTCCATGCAAGCCACTTCTCTGG113CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN40.041E15F011207 BN40 Brassica napus cDNA clone BN40041E15, mRNA sequence.
CD829170.1:113-132
CCTCTGTCTCCATGCAAGCCACTTCTCTGG113CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN40.042A03F011226 BN40 Brassica napus cDNA clone BN40042A03, mRNA sequence.
CD829407.1:114-133
CCTCTGTCTCCATGCAAGCCACTTCTCTGG114CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN40.042H12F011226 BN40 Brassica napus cDNA clone BN40042H12, mRNA sequence.
CD829545.1:116-135
CCTCTGTCTCCATGCAAGCCACTTCTCTGG116CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTGGGTTTCAAGGACT
BN40.045K21F011228 BN40 Brassica napus cDNA clone BN40045K21, mRNA sequence.
CD830485.1:106-125
CCTCTGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
BN45.041J15F011207 BN45 Brassica napus cDNA clone BN45041J15, mRNA sequence.
CD834383.1:113-132
CCTCTGTCTCCATGCAAGCCACTTCTCTGG113CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
RFO2.001O19F000720 RFO2 Brassica napus cDNA clone RFO2001O19, mRNA sequence.
CD838094.1:116-135
CCTCTGTCTCCATGCAAGCCACTTCTCTGG116CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
RFO2.125N19F010622 RFO2 Brassica napus cDNA clone RFO2125N19, mRNA sequence.
CD842057.1:104-123
CTTCCGTCTCCATGCAAGCCACTTCTCTGG104CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
RFO2.130E22F011011 RFO2 Brassica napus cDNA clone RFO2130E22, mRNA sequence.
CD843059.1:103-122
CCTCTGTCTCCATGCAAGCCACTTCTCTGG103CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
RFO2.138A03F011217 RFO2 Brassica napus cDNA clone RFO2138A03, mRNA sequence.
CD844285.1:103-122
CCTCTGTCTCCATGCAAGCCACTTCTCTGG103CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
RFO2.138I17F011217 RFO2 Brassica napus cDNA clone RFO2138I17, mRNA sequence.
CD844409.1:114-133
CTTCCGTCTCCATGCAAGCCACTTCTCTGG114CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
RFO2.139D10F011221 RFO2 Brassica napus cDNA clone RFO2139D10, mRNA sequence.
CD844558.1:102-121
CCTCTGTCTCCATGCAAGCCACTTCTCTGG102CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
25RDBNM_UP_010_C08_15JAN2004_060 Brassica napus 25RDBNM Brassica napus cDNA 5', mRNA sequence.
CN733359.1:115-134
CCTCTGTCTCCATGCAAGCCACTTCTCTGG115CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
25RDBNM_UP_016_C08_16JAN2004_060 Brassica napus 25RDBNM Brassica napus cDNA 5', mRNA sequence.
CN733727.1:108-127
CTTCCGTCTCCATGCAAGCCACTTCTCTGG108CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
26RDBNT_UP_016_D11_21JAN2004_089 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
CN736500.1:63-82
CCTCTGTCTCCATGCAAGCCACTTCTCTGG63CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
26RDBNT_UP_020_E01_22JAN2004_007 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
CN736843.1:90-109
CTTCCGTCTCCATGCAAGCCACTTCTCTGG90CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
EL1688R Brassica embryo library (EL) Brassica napus cDNA clone EL1688 5', mRNA sequence.
CN826560.1:105-124
CTTCCGTCTCCATGCAAGCCACTTCTCTGG105CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
EL3015R Brassica embryo library (EL) Brassica napus cDNA clone EL3015 5', mRNA sequence.
CN828669.1:94-113
CTTCCGTCTCCATGCAAGCCACTTCTCTGG94CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
EL3086R Brassica embryo library (EL) Brassica napus cDNA clone EL3086 5', mRNA sequence.
CN828754.1:89-108
CCTCTGTCTCCATGCAAGCCACTTCTCTGG89CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
EL3275R Brassica embryo library (EL) Brassica napus cDNA clone EL3275 5', mRNA sequence.
CN829072.1:94-113
CTTCCGTCTCCATGCAAGCCACTTCTCTGG94CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
EL476 Brassica embryo library (EL) Brassica napus cDNA clone EL476 complete, mRNA sequence.
CN830767.1:96-115
CTTCCGTCTCCATGCAAGCCACTTCTCTGG96CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
38RDBRM_UP_005_C08_30MAR2004_060 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX265954.1:105-124
CTTCCGTCTCCATGCAAGCCACTTCTCTGG105CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
38RDBRM_UP_008_C10_31MAR2004_076 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX266227.1:106-125
CTTCCGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
38RDBRM_UP_019_G08_02APR2004_052 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX267251.1:106-125
CTTCCGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
38RDBRM_UP_023_F02_10JUL2004_006 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX267540.1:114-133
CTTCCGTCTCCATGCAAGCCACTTCTCTGG114CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
38RDBRM_UP_025_E08_12JUL2004_056 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX267680.1:106-125
CTTCCGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
38RDBRM_UP_037_F06_13JUL2004_038 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX268668.1:106-125
CTTCCGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
38RDBRM_UP_050_H07_16JUL2004_049 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX269613.1:106-125
CTTCCGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
39RDBRT_UP_035_B06_20JUL2004_046 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272034.1:113-132
CCTCTGTCTCCATGCAAGCCACTTCTCTGG113CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
39RDBRT_UP_049_B01_22JUL2004_013 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX273013.1:106-125
CTTCCGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
Brassica oleracea var. viridis mRNA, clone: KALE-001D04, 5' end sequence.
DK456023.1:117-136
CTTCGGTCTCCATGCAAGCCACTTCTCTGG117CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
Brassica oleracea var. viridis mRNA, clone: KALE-047D22, 5' end sequence.
DK473604.1:108-127
CTTCGGTCTCCATGCAAGCCACTTCTCTGG108CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
Brassica oleracea var. viridis mRNA, clone: KALE-073D21, 5' end sequence.
DK483552.1:106-125
CTTCGGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
Brassica oleracea var. viridis mRNA, clone: KALE-001D04, 3' end sequence.
DK515655.1:117-136
CTTCGGTCTCCATGCAAGCCACTTCTCTGG117CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
Brassica oleracea var. viridis mRNA, clone: KALE-047D22, 3' end sequence.
DK533222.1:108-127
CTTCGGTCTCCATGCAAGCCACTTCTCTGG108CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
Brassica oleracea var. viridis mRNA, clone: KALE-073D21, 3' end sequence.
DK543147.1:106-125
CTTCGGTCTCCATGCAAGCCACTTCTCTGG106CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
8RDBRH_UP_012_G04_12SEP2003_020 Brassica rapa - 8RDBRH Brassica rapa cDNA 5', mRNA sequence.
DY009753.1:104-123
CCTCTGTCTCCATGCAAGCCACTTCTCTGG104CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:43970343-43970362
AATGTTTGTTGTATTGATGGAACAAACAGG43970343CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
Zea mays clone 11875 mRNA sequence.
DQ244950.1:118-137
CTTCCGTCTCCATGCAAGCCACTTCTCTGG118CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
Brassica napus genome assembly, chromosome: A05.
HG994359.1:39925933-39925952
AATGTTTGTTGTATTGATGGAACAAACAGG39925933CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:55136053-55136072
ATGTTTTGTTGTATTGATGGAACAAACAGG55136053CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:53041715-53041734
ATGTTTTGTTGTATTGATGGAACAAACAGG53041715CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
Bcg4-4=acyl carrier protein [Brassica rapa, Genomic, 3898 nt].
S84968.1:1836-1855
ATGTTTTGTTGTATTGATGGAACAAACAGG1836CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
Brassica napus 29C08 mRNA for seed acyl-carrier protein (ACP).
X13128.1:50-69
CTTCCGTCTCCATGCAAGCCACTTCTCTGG50CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
Brassica napus ACP05 DNA for acyl carrier protein.
X16114.1:389-408
ATGTTTTGTTGTATTGATGGAACAAACAGG389CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
Brassica napus ACP09 DNA for acyl carrier protein.
X16115.1:411-430
ATGTTTGTTGTATTGATGGAACAAACCAGG411CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGGTTTGGTTTCAAGGACT
B.napus ACP05 gene for acyl carrier protein.
X64114.1:1313-1332
ATGTTTTGTTGTATTGATGGAACAAACAGG1313CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAAGGACT
B.campestris (ACP-SF2) gene for acyl carrier protein.
X70337.1:1343-1362
ATGTTTTGTTGTATTGATGGAACAAACAGG1343CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT
Brassica capestris mRNA for acyl carrier protein (ACP).
Y00418.1:82-101
CTTCCGTCTCCATGCAAGCCACTTCTCTGG82CAGCAACAACGAGGATTAGTTTCCAGAAGCCAGCTTTGGTTTCAACGACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGCAACAACGAGGATTAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCAACAACGAGGATTAGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
3.273 | 3.264 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCAACAACGAGGATTAGT&k=0&no_gap=0&offset=0&limit=50
3.337 | 0.064 | search_minus_done; http://172.18.8.135:50400/match?q=ACTAATCCTCGTTGTTGCTG&k=0&no_gap=0&offset=0&limit=0
3.337 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).