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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 21:00:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Porphyra yezoensis cDNA, clone:PFL008d06_r, 5'end.
AU190872.1:453-470
CAACAGCAGCAGCACCTTCAACTGCAGCAG453CAGCAACGACATCGCTTGCCAGCGAAAACTTCGCGGCAGCAGCAGCTG
Porphyra yezoensis cDNA, clone:PFL088c02_r, 5'end.
AU196333.1:138-155
CAACAGCAGCAGCACCTTCAACTGCAGCAG138CAGCAACGACATCGCTTGCCAGCGAAAACTTCGCGGCAGCAGCAGCTG
Porphyra yezoensis cDNA clone:PL030h10_r, 5' end.
AV431159.1:95-112
CAACAGCAGCAGCACCTTCAACTGCAGCAG95CAGCAACGACATCGCTTGCCAGCGAAAACTTCGCGGCAGCAGCAGCTG
Planctomycetes bacterium Pan216 chromosome, complete genome.
CP036279.1:1064626-1064643
CGGACGTCAAGCGGCCCCGCTTTTCGCGGC1064626CAGCAACGACATCGCTTGGGTTGAGATTGGACGAGAAATCGAGCCATC
Aeromonas sp. FDAARGOS 1405 chromosome, complete genome.
CP077311.1:4441100-4441117
CCGAACCCCTTGCTGCTGCACCTCTTGCGG4441100CAGCAACGACATCGCTTGCTGCAGCTTGTTCTGCACCTGCACCTGGGC
Nocardia puris strain NBC_00392 chromosome, complete genome.
CP107943.1:2284375-2284392
TACATCGGCTACTCCGAGATCCGCGAGCTT2284375CAGCAACGACATCGCTTGGTGGCGACCCGATTGCCACTCCGAGTAGTA
Aeromonas veronii strain YOR 16989 chromosome, complete genome.
CP121810.1:556683-556700
CCGAACCCCTTGCTGCTGCACCTCTTGCGG556683CAGCAACGACATCGCTTGCTGCAGCTTGTTCTGCACCTGCACCTGGGC
Hirtodrosophila cameraria genome assembly, chromosome: 1.
OX453089.1:15610932-15610949
GATTAGGCGCCTGAGTGCGCAAGGACATGA15610932CAGCAACGACATCGCTTGCATCCATTTCCATATATCCTCTTCCAGTCG
Exephanes ischioxanthus genome assembly, chromosome: 3.
OY294017.1:25019032-25019049
AAAAATCTGATGAGAGCAGTGCTTCGAACG25019032CAGCAACGACATCGCTTGATGGTACAAATGCCAGAGCTGGTACAAATG
Amycolatopsis sp. NBC_01307 chromosome, complete genome.
CP108403.1:5784350-5784367
CCGGTTGATCCTGCGGTTGCCGGCGCGGGA5784350CAAGCGATGTCGTTGCTGTTCCCCGGAGGATGCGTCCAACGGCGCAGT
Inachis io genome assembly, chromosome: 17.
LR989912.1:10208956-10208973
TGATTTAATACATTCGTTTGTTCAACAGGA10208956CAAGCGATGTCGTTGCTGGTACCGGACACATCGTACTCCTCGTCCGAG
Sialis lutaria genome assembly, chromosome: 2.
OX439232.1:14851451-14851468
TCACGGGGAAGCTTATTCCCAAAGTTATCA14851451CAAGCGATGTCGTTGCTGCTCCTAAATGCACGTATGATTCGAATTGCG
Ophion ellenae genome assembly, chromosome: 7.
OY723391.1:46856785-46856802
CTGATATTGTTCGTTGATGGTGTCGTTGCA46856785CAAGCGATGTCGTTGCTGATCGTTTCGGAGTCTCGGCGCGGGTATCGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGCAACGACATCGCTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCAACGACATCGCTTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.125 | 0.117 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCAACGACATCGCTTG&k=0&no_gap=0&offset=0&limit=50
0.153 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGCGATGTCGTTGCTG&k=0&no_gap=0&offset=0&limit=41
0.156 | 0.003 | cgi_end;

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