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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 18:12:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gobio gobio genome assembly, chromosome: 4.
OX442377.1:29713563-29713582
GATTGAGAGGCCAGTTTGACAGTTTTGAAA29713563CAGCAGCAAAAGGAATGTCACCTACTATTTCACAGGCCTACAAAAGTGAC
Gobio gobio genome assembly, chromosome: 15.
OX442388.1:9103804-9103823
GGTTGAGAGGCCAGTTTGACAGTTTTGAAA9103804CAGCAGCAAAAGGAATGTCACCTATTTCACAGGCCTACAAAAGTGACTCC
Papilio polytes DNA, Fosmid clone: PPPFCC-045O05, sequence: PPPFCC-045O05.g.
LB216956.1:554-573
TGTGATTGTGTAACCTTTTGCCATCAACAC554CAGCAGCAAAAGGAATGTCATCTCAGAGACGCCACATAGGAATTGACCTA
Sambucus nigra genome assembly, chromosome: 6.
OX422212.1:435351106-435351125
TAATGTTAGGAAATTTCCTCTTTCCCATAG435351106CAGCAGCAAAAGGAATGTCAGAATACAAAGATGAAGAGGGATCAGCAACA
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:222803-222822
GCTGGTCTGGAACAATAGAAGGAAAGGGAA222803CAGCAGCAAAAGGAATGTCAGTTGTTTGTTGAGATTGAGTTTTAGGCGGG
Pinctada fucata DNA, chromosome 2, nearly complete sequence, Principal Pseudohaplotype.
AP027103.1:11146666-11146685
ATAAAACAATCCAACAAGTATGAAGTGATG11146666CAGCAGCAAAAGGAATGTCACAAGACCTTGGACTTAATGAAATGACCATA
Pinctada fucata DNA, chromosome 2, nearly complete sequence, Alternate Pseudohaplotype.
AP027117.1:10582211-10582230
ATAAAACAATCCAACAAGTATGAAGTGATG10582211CAGCAGCAAAAGGAATGTCACAAGACCTTGGACTTAATGAAATGACCATA
Plecotus auritus genome assembly, chromosome: 3.
OY734024.1:123314463-123314482
AGAGAGAGAGAGAGAGAGATAGGATGCCTA123314463TGACATTCCTTTTGCTGCTGTTATTTGAGGCTCAGCAGAGGGTGGGATGT
Plecotus auritus genome assembly, chromosome: 9.
OY734030.1:32825287-32825306
GCATCAACTGTTTTGTTCCTTAGAGTGTAC32825287TGACATTCCTTTTGCTGCTGACTCTACTCCTTACCACATTCTTGCTCAGT
Zeus faber genome assembly, chromosome: 18.
OY482862.1:7911552-7911571
AAAAAGCAAGCCCAGGCCCCCATTCCGATT7911552TGACATTCCTTTTGCTGCTGTGGTTTTGTTATTGTACTCTGGCTAGGCTT
Trifolium repens mRNA, clone: WCC05n12_088, unspecified EST.
FY456006.1:263-282
TCCCGGACGCCCGCCTAAACAACAAACAAC263TGACATTCCTTTTGCTGCTGTTCCCTTTCCTTCTATTGTTCCAGACCAGC
Papilio polytes DNA, Fosmid clone: PPPFCC-014H16, sequence: PPPFCC-014H16.b.
LB194396.1:161-180
TAGGTCAATTCCTATGTGGCGTCTCTGAGA161TGACATTCCTTTTGCTGCTGGTGTTGATGGCAAAAGGTTACACAATCACA
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:63945783-63945802
CCCGCCTAAAACTCAATCTCAACAAACAAC63945783TGACATTCCTTTTGCTGCTGTTCCCTTTCCTTCTATTGTTCCAGACCAGC
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:59499474-59499493
TCCCGGACGCCCGCCTAAACAACAAACAAC59499474TGACATTCCTTTTGCTGCTGTTCCCTTTCCTTCTATTGTTCCAGACCAGC
Sambucus nigra genome assembly, chromosome: 8.
OX422214.1:217014396-217014415
TACTTCAGGCCCTTCTTCATTCTTGGACTC217014396TGACATTCCTTTTGCTGCTGCTATGGGAAAGAGAAAATTCTCCAATATAA
Eunapius fragilis genome assembly, chromosome: 18.
OY811988.1:807169-807188
GGTATATGCACTCTACAAGGTTGTTGATGA807169TGACATTCCTTTTGCTGCTGCCCATTGCATTGATGGAGAATATGCTGACC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGCAGCAAAAGGAATGTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCAGCAAAAGGAATGTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.164 | 0.155 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCAGCAAAAGGAATGTCA&k=0&no_gap=0&offset=0&limit=50
0.363 | 0.199 | search_minus_done; http://172.18.8.135:50400/match?q=TGACATTCCTTTTGCTGCTG&k=0&no_gap=0&offset=0&limit=43
0.369 | 0.006 | cgi_end;

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