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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 02:06:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

0207685 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV141754.1:139-158
GAGAGACACTCAATTTATTCAAAGCTACTG139CAGCAGCAATGTAGAGACAGTGAGCTTAAGTTGTAAGGATTGGAGGCAGG
0078986 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV155125.1:33-52
ATGGGACCGGGCCCCCCATTCAAGCTACTT33CAGCAGCAATGTAGAGACAGTGAGCTTAAGTTGTAAGGATTGGAGGCAGG
0144494 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV167684.1:245-264
GAGAGACACTCAATTTATTCAAAGCTACTG245CAGCAGCAATGTAGAGACAGTGAGCTTAAGTTGTAAGGATTGGAGGCAGG
0149819 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV179363.1:155-174
GAGAGACACTCAATTTATTCAAAGCTACTG155CAGCAGCAATGTAGAGACAGTGAGCTTAAGTTGTAAGGATTGGAGGCAGG
0151608 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV180294.1:126-145
GAGAGACACTCAATTTATTCAAAGCTACTG126CAGCAGCAATGTAGAGACAGTGAGCTTAAGTTGTAAGGATTGGAGGCAGG
0154981 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV182097.1:118-137
GAGAGACACTCAATTTATTCAAAGCTACTG118CAGCAGCAATGTAGAGACAGTGAGCTTAAGTTGTAAGGATTGGAGGCAGG
0172346 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV204622.1:163-182
GAGAGACACTCAATTTATTCAAAGCTACTG163CAGCAGCAATGTAGAGACAGTGAGCTTAAGTTGTAAGGATTGGAGGCAGG
RS2A958JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW728470.1:109-128
GAGATATACTCAATTTATTCAAAGCTACTG109CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
RS2AB69JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW728979.1:184-203
GAGATATACTCAATTTATTCAAAGCTACTG184CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
RR2BY92JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX759409.1:173-192
GAGAGATACTCGTTTTATTCAAAGCTACAG173CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
RS1BT44JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX891571.1:108-127
GAGATATACTCAATTTATTCAAAGCTACTG108CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
RS2BK43JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX898838.1:200-219
GAGAGACACTCAATTTATTCAAAGCTACTG200CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
RR4EB20JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY920723.1:291-310
GAGAGACACTCAATTTATTCAAAGCTACTG291CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
RS3E372JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EY945136.1:225-244
GAGATATACTCAATTTATTCAAAGCTACTG225CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
RR4F786JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD554313.1:170-189
GAGAGACACTCAATTTATTCAAAGCTACTG170CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
RS2FU45JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD575540.1:160-179
GAGATATACCCAATTTATTCAAAGCTACTG160CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
RS1G535JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD934980.1:231-250
GAGAGACACTCAATTTATTCAAAGCTACTG231CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
RS1G839JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD935172.1:231-250
GAGAGACACTCAATTTATTCAAAGCTACTG231CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF08K01, 3'-end sequence.
FY071040.1:144-163
GAGAGACACTCAATTTATTCAAAGCTACGG144CAGCAGCAATGTAGAGACAGCAAGCTTAGGTTGTAAGGATTGGAGGCAGG
BNAOV1GH_T3_045_E04_12JUL2007_024 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR443576.1:206-225
GAGAGACACTCAATTTATTCAAAGCTACTG206CAGCAGCAATGTAGAGACAGTGAGCTTAAGTTGTAAGGATTGGAGGCAGG
0266424 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO961266.1:147-166
GAGAGACACTCAATTTATTCAAAGCTACGG147CAGCAGCAATGTAGAGACAGCAAGCTTAGGTTGTAAGGATTGGAGGCAGG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1943.
FX657866.1:261-280
GAGAGACACTCAATTTATTCAAAGCTACTG261CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGTAGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11337.
FX745643.1:185-204
GAGAGACACTCAATTTATTCAAAGCTACGG185CAGCAGCAATGTAGAGACAGCAAGCTTAGGTTGTAAGGATTGGAGGCAGG
TSA: Raphanus sativus RS21066 mRNA sequence.
JT805613.1:165-184
GAGATATACTCAATTTATTCAAAGCTACTG165CAGCAGCAATGTAGAGACAGTGAACTTAGGTTGTAAGGATTGGAGGCAGG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089M05, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189514.2:78720-78739
GAGAGACACTCAATTTATTCAAAGCTACGG78720CAGCAGCAATGTAGAGACAGCAAGCTTAGGTTGTAAGGATTGGAGGCAGG
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:39872792-39872811
GAGAGACACTCAATTTATTCAAAGCTACTG39872792CAGCAGCAATGTAGAGACAGTGAGCTTAAGTTGTAAGGATTGGAGGCAGG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:44931152-44931171
GAGAGACACTCAATTTATTCAAAGCTACTG44931152CAGCAGCAATGTAGAGACAGTGAGCTTAAGTTGTAAGGATTGGAGGCAGG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:43938430-43938449
GAGAGACACTCAATTTATTCAAAGCTACTG43938430CAGCAGCAATGTAGAGACAGTGAGCTTAAGTTGTAAGGATTGGAGGCAGG
17ACDHMS_UP_003_G03_28JAN2004_019 Brassica napus 17ACDHMS Brassica napus cDNA 5', mRNA sequence.
CN725921.1:200-219
CCTGCCTCCAATCCTTACAACTTAAGCTCA200CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
SS0756.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS0756.txt 5', mRNA sequence.
CV544975.1:279-298
CCTGCCTCCAATCCTTACAACCTAAGCTTG279CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
82-E024498-021-024-C21-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022C2124Q, mRNA sequence.
CX188763.1:643-662
CCTGCCTCCGATCCTTACAACTTAAGCTCA643CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
74-E019393-021-011-C19-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022C1911Q, mRNA sequence.
CX189632.1:29-48
TGCCTCCAATCCTTACAACTTAAGCTCA29CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-003O12, 3' end sequence.
DK516683.1:595-614
CCTGCCTCCAATCCTTACAACTTAAGCTCA595CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-036F24, 3' end sequence.
DK529073.1:542-561
CCTGCCTCCAATCCTTACAACTTAAGCTCA542CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-037E06, 3' end sequence.
DK529414.1:637-656
CCTGCCTCCAATCCTTACAACTTAAGCTCA637CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-074I03, 3' end sequence.
DK543632.1:585-604
CCTGCCTCCAATCCTTACAACTTAAGCTCA585CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. viridis mRNA, clone: KALE-108A17, 3' end sequence.
DK556451.1:544-563
CCTGCCTCCAATCCTTACAACTTAAGCTCA544CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
54ACDHPE_UP_027_B09_10NOV2004_077 Brassica napus DH12075 PEG Brassica napus cDNA 5', mRNA sequence.
DY003437.1:312-331
CCTGCCTCCAATCCTTACAACTTAAGCTCA312CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
21ACACMS_UP_029_C12_06NOV2004_092 Brassica napus 21ACACMS Brassica napus cDNA 5', mRNA sequence.
EE409536.1:228-247
CCTGCCTCCAATCCTTACAACTTAAGCTCA228CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
BNYS8DCT_UP_030_D10_21APR2005_074 Brassica napus seeds BNYS8DCT Brassica napus cDNA 5', mRNA sequence.
EE482768.1:614-633
CCTGCCTCCAATCCTTACAACTTAAGCTCA614CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0162330 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV130217.1:131-150
CCTGCCTCCAATCCTTACAACTTAAGCTCA131CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0079026 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV155165.1:353-372
CCTGCCTCCAATCCTTACAACTTAAGCTCA353CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATGGGGGGGCCCGGTACC
0079378 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV155517.1:354-373
CCTGCCTCCAATCCTTACAACTTAAGCTCA354CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATGGGGGGGCCCGGTACC
0144409 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV167599.1:671-690
CCTGCCTCCAATCCTTACAACTTAAGCTCA671CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0144570 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV167760.1:328-347
CCTGCCTCCAATCCTTACAACTTAAGCTCA328CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0151151 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV171005.1:529-548
CCTGCCTACAATCCTTACAACTTAAGCTCA529CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0150023 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV179443.1:377-396
CCTGCCTCCAATCCTTACAACTTAAGCTCA377CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
0151762 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV180369.1:438-457
CCTGCCTCCAATCCTTACAACTTAAGCTCA438CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
BR036586 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-080C01 5', mRNA sequence.
EX051942.1:182-201
CCTGCCTCCAATCCTTACAACCTAAGCTTG182CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
BR067917 silique cDNA library KBSQ Brassica rapa subsp. pekinensis cDNA clone KBSQ-02D04 5', mRNA sequence.
EX083273.1:446-465
CCTGCCTCCAATCCTTACAACCTAAGCTTG446CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3419.
FX693115.1:2330-2349
CCTGCCTCCAATCCTTACAACCTAAGCTTG2330CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
BOMKF33TF BO_2_3_KB Brassica oleracea genomic clone BOMKF33, genomic survey sequence.
BH737084.1:241-260
CCTGCCTCCCATCCTTACAACTTAAGCTCA241CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
odh22d12.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH927633.1:559-578
CCTGCCTCCAATCCTTACAACTTAAGCTCA559CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
KBrH134I02 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT022967.1:260-279
CCTGCCTCCAATCCTTACAACCTAAGCTTG260CTGTCTCTACATTGCTGCTGCCGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea phospholipase D2 (PLD2) mRNA, complete cds.
AF090444.1:2501-2520
CCTGCCTCCAATCCTTACAACTTAAGCTCA2501CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. capitata phospholipase D2 (PLD2) gene, complete cds.
AF113919.1:3594-3613
CCTGCCTCCAATCCTTACAACTTAAGCTCA3594CTGTCTCTACATTGCTGCTGC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:8445705-8445724
CCTGCCTCCAATCCTTACAACTTAAGCTCA8445705CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:4113886-4113905
CCTACCTCCAATCCTTACAACCTAAGTTCA4113886CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:4113886-4113905
CCTACCTCCAATCCTTACAACCTAAGTTCA4113886CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Brassica oleracea var. capitata phospholipase D mRNA, complete cds.
U85482.1:2550-2569
CCTGCCTCCAATCCTTACAACTTAAGCTCA2550CTGTCTCTACATTGCTGCTGCAGTAGCTTTGAATAAATTGAGTGTCTCTC
Zelleria hepariella genome assembly, chromosome: 6.
OX439384.1:18243813-18243832
CGGCGGCGGCGGCGGCGGCGCGACACGCGG18243813CTGTCTCTACATTGCTGCTGCTACACATTCAATGTTCGAAAGATTTGCGA
Ceriagrion tenellum genome assembly, chromosome: 8.
OY720640.1:40700680-40700699
ATGAGAGTTCATTTATAGCATGATTATTTA40700680CTGTCTCTACATTGCTGCTGCGATGAGTCAATCTCAGTTCCTGCCCACAG

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