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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-04 12:09:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB024J16, complete sequence.
AC189275.2:23106-23125
TATCCTTAATCTCATACCTAAACTTCTCAT23106CAGCATCTGCGGAGTAAGAAGCATCCAATTCCATCATAAGCCAAGTAAAA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:35091710-35091729
TATCCTTAATCTCATACCTAAACTTCTCAT35091710CAGCATCTGCGGAGTAAGAAGCATCCAAATTCATCAGAAGCCAAGTAAAA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:29560866-29560885
TATCCTTAATCTCATACCTAAACTTCTCAT29560866CAGCATCTGCGGAGTAAGAAGCATCCAAATTCATCAGAAGCCAAGTAAAA
Brassica rapa genome, scaffold: A02.
LR031573.1:27825058-27825077
TATCCTTAATCTCATACCTAAACTTCTCAT27825058CAGCATCTGCGGAGTAAGAAGCATCCAATTTCATCAGAAGCCAAGTAAAA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:57467301-57467320
TATCCTTAATCTCATACCTAAACTTCTCAT57467301CAGCATCTGCGGAGTAAGAAGCATCCAAATTCATCAGAAGCCAAGTAAAA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:28756272-28756291
TATCCTTAATCTCATACCTAAACTTCTCAT28756272CAGCATCTGCGGAGTAAGAAGCATCCAATTTCATCAGAAGCCAAGTAAAA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:13832482-13832501
TTTACCTTAACTTCTGATGGAATTGGATGC13832482TTCTTACTCCGCAGATGCTGATGAGAAGTTCAGGTATGAGATTAAAGATA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:13832482-13832501
TTTACCTTAACTTCTGATGGAATTGGATGC13832482TTCTTACTCCGCAGATGCTGATGAGAAGTTCAGGTATGAGATTAAAGATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGCATCTGCGGAGTAAGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCATCTGCGGAGTAAGAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.261 | 0.253 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCATCTGCGGAGTAAGAA&k=0&no_gap=0&offset=0&limit=50
0.363 | 0.102 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTTACTCCGCAGATGCTG&k=0&no_gap=0&offset=0&limit=44
0.364 | 0.001 | cgi_end;

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