GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:37314074-37314094

AGATTCTACTGGATTCGGTGTGCTGTTTCC37314074CAGCATGTTCGGATTGATAGAGATGCTATTTTCATCAAATTTTCCAGGAAA

Pyrus communis genome assembly, chromosome: 6.
OY757073.1:26604771-26604791

AGTTTCTACTGGATTCGAAGTGCTGTTTCC26604771CAGCATGTTCGGATTGATAGAGATGTTATTTTCATCAAATTTCCCAGGAAA

010812AASB003092HT (AASB) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASB003092, mRNA sequence.
EB141136.1:344-364

TTTCCTGGAAAATTTGATGAAAGTAACATC344TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

TSA: Pyrus pyrifolia mRNA, contig: contig_8917.
FX398172.1:528-548

TTTCCTGGAAAATTTGATGACAATAACATC528TCTATCAATCCGAACATGCTGCCAAACAGCACACCGAATCCAGTAGAATCT

TSA: Pyrus x bretschneideri Unigene2854_XinShao mRNA sequence.
JR598168.1:435-455

TTTCCTGGAAAATTTGATGACAATAACATT435TCTATCAATCCGAACATGCTGCCAAACAGCACACCGAATCCAGTAGAATCT

TSA: Pyrus x bretschneideri Unigene7062_XinShao mRNA sequence.
JR602256.1:157-177

TTTCCTGGAAAATTTGATGACAATAACATT157TCTATCAATCCGAACATGCTGCCAAACAGCACACCGAATCCAGTAGAATCT

Malus x domestica BHLH domain class transcription factor (BHLH21) mRNA, complete cds.
HM122457.1:771-791

TTTCCTGGAAAATTTGATGAAAGTAACATC771TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:3394340-3394360

TTTCCTGGAAAATTTGATGAAAATAACATC3394340TCTATCAATCCGAACATGCTGGGAAACAGCACACCAAATCCAGTAGAATCT

Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:3398117-3398137

TTTCCTGGAAAATTTGATGAAAGTAACATC3398117TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:3595226-3595246

TTTCCTGGAAAATTTGATGAAAATAACATC3595226TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT

Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:3783193-3783213

TTTCCTGGAAAATTTGATGAAAGTAACATC3783193TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:3601083-3601103

TTTCCTGGAAAATTTGATGAAAGTAACATC3601083TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141982.1:36340562-36340582

TTTCCTGGAAAATTTGATGAAAATAGCATC36340562TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT

Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:4124227-4124247

TTTCCTGGAAAATTTGATGAAAGTAACATC4124227TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:3616642-3616662

TTTCCTGGAAAATTTGATGAAAATAACATC3616642TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT

Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:3878174-3878194

TTTCCTGGAAAATTTGATGAAAGTAACATC3878174TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:3567011-3567031

TTTCCTGGAAAATTTGATGAAAATAACATC3567011TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT

Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:3602473-3602493

TTTCCTGGAAAATTTGATGAAAGTAACATC3602473TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus domestica genome assembly, chromosome: 13.
OU696689.1:3658294-3658314

TTTCCTGGAAAATTTGATGAAAATAACATC3658294TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT

Malus domestica genome assembly, chromosome: 16.
OU696692.1:3897445-3897465

TTTCCTGGAAAATTTGATGAAAGTAACATC3897445TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus domestica genome assembly, chromosome: 13.
OU744554.1:3615081-3615101

TTTCCTGGAAAATTTGATGAAAATAACATC3615081TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT

Malus domestica genome assembly, chromosome: 16.
OU744557.1:3900457-3900477

TTTCCTGGAAAATTTGATGAAAGTAACATC3900457TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus domestica genome assembly, chromosome: 13.
OU744965.1:3595092-3595112

TTTCCTGGAAAATTTGATGAAAATAACATC3595092TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT

Malus domestica genome assembly, chromosome: 16.
OU744968.1:3865255-3865275

TTTCCTGGAAAATTTGATGAAAGTAACATC3865255TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus domestica genome assembly, chromosome: 13.
OU745003.1:3498309-3498329

TTTCCTGGAAAATTTGATGAAAATAACATC3498309TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT

Malus domestica genome assembly, chromosome: 16.
OU745006.1:3902165-3902185

TTTCCTGGAAAATTTGATGAAAGTAACATC3902165TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus x robusta genome assembly, chromosome: 3.
OY720327.1:4229977-4229997

TTTCCTGGAAAATTTGATGAAAGTAACATC4229977TCTATCAATCCGAACATGCTGGCAAACAGCACACCGAATCCAGTAGAATCT

Malus x robusta genome assembly, chromosome: 9.
OY720333.1:3567972-3567992

TTTCCTGGAAAATTTGATGAAAATAACATC3567972TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCT

Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:3804629-3804649

TTTCCTGGGCAGTTTGATGAAAATAACATC3804629TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAAACT

Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:3846146-3846166

TTTCCTGGGAAGTTTGATGAAAATAACATC3846146TCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAAACT

Pyrus communis genome assembly, chromosome: 4.
OY757071.1:3161365-3161385

TTTCCTGGAAAATTTGATGACAATAACATC3161365TCTATCAATCCGAACATGCTGCCAAACAGCACACCGAATCCAGTAGAATCT

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Debug Info:

0.009 | 0.009 | search_start;
0.106 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCATGTTCGGATTGATAGA&k=0&no_gap=0&offset=0&limit=50
0.228 | 0.123 | search_minus_done; http://172.18.8.135:50400/match?q=TCTATCAATCCGAACATGCTG&k=0&no_gap=0&offset=0&limit=48
0.248 | 0.020 | cgi_end;

Summary:

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