GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 08:44:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-9083 Pericarp Coffea canephora cDNA clone cccp17m16 5', mRNA sequence.
DV673150.1:274-294
AAGTAGATGAACATGATTCAGCAGAGGAGG274CAGCCGTATCAGCACCAGCATCAGCAGCAGCAGCAGCAAAAGGAAAAGGAA
CGN-34610 Leaf Coffea canephora cDNA clone cccl25p11 5', mRNA sequence.
DV691033.1:368-388
AAGTAGATGAACATGATTCAGCAGAGGAGG368CAGCCGTATCAGCACCAGCATCAGCAGCAGCAGCAGCAAAAGGAAAAGGAA
CGN-53157 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w3c10 5', mRNA sequence.
DV705941.1:595-615
AAGTAGATGAACATGATTCAGCAGAGGAGG595CAGCCGTATCAGCACCAGCATCAGCAGCAGCAGCAGCAAAAGGAAAAGGAA
CGN-53290 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w12e23 5', mRNA sequence.
DV706036.1:594-614
AAGTAGATGAACATGATTCAGCAAAGGAGG594CAGCCGTATCAGCACCAGCATCAGCAGCAGCAGCAGCAAAAGGAAAAGGAA
CGN-53597 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w17p21 5', mRNA sequence.
DV706257.1:595-615
AAGTAGATGAACATGATTCAGCAGAGGAGG595CAGCCGTATCAGCACCAGCATCAGCAGCAGCAGCAGCAAAAGGAAAAGGAA
TransId-273238 CarCatLeEnri2 Coffea arabica cDNA clone CarCatLeEnri2_52-A02-PAL17d similar to Hypothetical protein - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT018095.1:467-487
AAGTAGATGAACATGATTCAGCAGAGGAGG467CAGCCGTATCAGCACCAGCATCAGCAGCAGCAGCAAAAGGAAAAGGAATAG
TransId-280870 CarCatBudEnri2 Coffea arabica cDNA clone CarCatBudEnri2_77-H09-PAL17d similar to Hypothetical protein - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT020746.1:441-461
AAGTAGATGAACATGATTCAGCAGAGGAGG441CAGCCGTATCAGCACCAGCATCAGCAGCAGCAGCAGCAAAAGGAAAAGGAA
Hibiscus tridactylites genome assembly, chromosome: 27.
OY288291.1:7223073-7223093
AAAATCGACGATTTTGCTCCCATCTCCACG7223073CAGCCGTATCAGCACCAGCATCAGCATGCGGTGGCGCAACAGACCGAATCT
Drepanosiphum platanoidis genome assembly, chromosome: 4.
OX402531.1:512310-512330
GGACGACGACGGCTGATAGTCCACGTTGTG512310ATGCTGGTGCTGATACGGCTGTTGCTGGAGTTGGTCGTAGTGCTGACCGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGCCGTATCAGCACCAGCAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCCGTATCAGCACCAGCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.526 | 0.517 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCCGTATCAGCACCAGCAT&k=0&no_gap=0&offset=0&limit=50
0.546 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=ATGCTGGTGCTGATACGGCTG&k=0&no_gap=0&offset=0&limit=42
0.547 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).