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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-10 01:54:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gadus morhua genome assembly, chromosome: 17.
LR633959.1:3219607-3219626
CATAACACGGAGGGCCCGGGGCCCCTTACA3219607CAGCTCAACACAACACAAAGGGACAAGGTTTAGCGCAGATTACGTGATGT
Squalius cephalus genome assembly, chromosome: 3.
OX439249.1:7178116-7178135
ACCAAATACACCAGCTCCAAGTAGAGGAGT7178116CAGCTCAACACAACACAAAGGCTCTTTTAAGAGCCACACATATTATCTGC
Borostomias antarcticus genome assembly, chromosome: 5.
OX465208.1:28358282-28358301
TGTAACTACAGCAAAGCGCTACAACATGTC28358282CAGCTCAACACAACACAAAGTCGAGGTATCAATGTGTCATCAGCTAGCCT
Gymnoscopelus braueri genome assembly, chromosome: 24.
OY725531.1:34529116-34529135
AAAGTCTAACAACATCATTCAGGATCATAT34529116CAGCTCAACACAACACAAAGACAGACACTTAGAGGTCAGGTGGTTTTAGT
Gymnoscopelus braueri genome assembly, chromosome: 24.
OY725531.1:34531631-34531650
AAAGTCTAACAACATCATTCAGGACCATAT34531631CAGCTCAACACAACACAAAGACAGACACATAGAGGTCAGGTGGTTTTAGT
PMAO-aae38a09.b1 Lamprey_EST_Embryo Petromyzon marinus cDNA 3', mRNA sequence.
EG338527.1:84-103
TTTATATGCCACGGCAAGACCTATTCCCTG84CAGCTCAACACAACACAAAGATCCATAACTGGTTTGGCAAAAAATAACAA
LJGBG86TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA sequence.
GO008113.1:10-29
GACTCAACT10CAGCTCAACACAACACAAAGATCACAACAACATTACAATTCACAAGCATC
LJGBH72TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA sequence.
GO008296.1:6-25
GAACT6CAGCTCAACACAACACAAAGATCACAACAACATTACAATTCACAAGCATC
TSA: Ictalurus punctatus clc_265369 mRNA sequence.
JT406269.1:1434-1453
TAATGGGGTGCAAGAGTTTAGTTCTGCTCT1434CAGCTCAACACAACACAAAGCTTTATAAAGGGTGCCAATAATTCTGACCT
Secale cereale clone BACS34p1J5 sequence, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.
MG646013.1:106273-106292
TGGACGGCAAAGGAATATGATGATACCCAT106273CAGCTCAACACAACACAAAGAGCAGACAGCAAAGCAAACAGAGAGAGAGA
Secale cereale genome assembly, chromosome: 0R.
LR738716.1:379440849-379440868
TGGACGGCAAAGGAATATGATGATACCCAT379440849CAGCTCAACACAACACAAAGAGCAGACAGCAAAACAAACAGAGAGAGAAA
Nematostella vectensis genome assembly, chromosome: 15.
OW051999.1:4746603-4746622
AGTCACACTGCAGCACATCACAGCACAATG4746603CAGCTCAACACAACACAAAGCACATCACAACACAAAGCACACCACCACAC
Stomorhina lunata genome assembly, chromosome: 1.
OW121740.1:16136870-16136889
GGAACGACAGACATACTTACGAAATATGAG16136870CAGCTCAACACAACACAAAGGTGGTCACCAACAATTGATACAAATCTTGG
Labia minor genome assembly, chromosome: 2.
OY720345.1:56513059-56513078
TAAAAGATTGCTCAGAGACATTACCGAAAA56513059CAGCTCAACACAACACAAAGTGATTTATTCGCCTTTCATATTATACCTTG
Sepioteuthis lessoniana genome assembly, chromosome: 4.
OY757907.1:62568658-62568677
AACAACATACATGTACGCAACACACACATA62568658CAGCTCAACACAACACAAAGACAAACACAAATACATATTCATATATATAT
Gadus macrocephalus isolate Gmac_GOA_2020 chromosome 17.
CP133518.1:1969753-1969772
ACATCACGTAATCTGCGCTAAACCTTGTCC1969753CTTTGTGTTGTGTTGAGCTGTGTAAGGGGCCCCGGGCCCTCCGTGTTACG
Pseudochaenichthys georgianus genome assembly, chromosome: 21.
LR792566.1:26129815-26129834
CTAAGATAATGGGTTTTAGACCAGCTGCTC26129815CTTTGTGTTGTGTTGAGCTGGATATGAGTCATAAGTAACATGTGCCTTTG
Squalius cephalus genome assembly, chromosome: 3.
OX439249.1:7261957-7261976
CAAGACAATATGTGTGGCTCTTAAAAGAGC7261957CTTTGTGTTGTGTTGAGCTGACTCCTCTACTTGGAGCTGGTGTATTTGGT
Notothenia rossii genome assembly, chromosome: 2.
OX449112.1:80420646-80420665
GTTAAGATAATGGGTTTTAGCCAGCTGCTC80420646CTTTGTGTTGTGTTGAGCTGGATATGAGTCATAGGTAACATGTGCCTTTG
Argentina silus genome assembly, chromosome: 16.
OX637383.1:7161585-7161604
TTGGATTTTATTTCAAATTTGATGTTTTGT7161585CTTTGTGTTGTGTTGAGCTGAAATTAGCTAATTTTGAAAGAGAACAGACA
LJGAL92TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence.
GO015100.1:302-321
GATGCTTGTGAATTGTAATGTTGTTGTGAT302CTTTGTGTTGTGTTGAGCTGAGTTCC
LJGBG86TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence.
GO017691.1:392-411
GATGCTTGTGAATTGTAATGTTGTTGTGAT392CTTTGTGTTGTGTTGAGCTGAGTTGAGTC
LJGBH72TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence.
GO017758.1:389-408
GATGCTTGTGAATTGTAATGTTGTTGTGAT389CTTTGTGTTGTGTTGAGCTGAGTTC
LJNBB96TO JCVI-LJ3 Lotus japonicus cDNA 3', mRNA sequence.
GO041261.1:401-420
GATGCTTGTGAATTGTAATGTTGTTGTGAT401CTTTGTGTTGTGTTGAGCTGAGTTCC
Lotus japonicus genomic DNA, chromosome 4, clone: LjT47B07, TM0832.
AP007623.2:62796-62815
GATGCTTGTGAATTGTAATGTTGTTGTGAT62796CTTTGTGTTGTGTTGAGCTGAGTTGAGTGTGTGAGGTTATGACGTTTTGG
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:6163142-6163161
GATGCTTGTGAATTGTAATGTTGTTGTGAT6163142CTTTGTGTTGTGTTGAGCTGAGTTGAGTGTGTGAGGTTATGACGTTTTGG
Ptilodon capucinus genome assembly, chromosome: 19.
OU611826.1:6388955-6388974
CTACGGAAATAAACTAATAGATAGTTGGGC6388955CTTTGTGTTGTGTTGAGCTGAATACCTAGCACTTCTCATATCAGCTTGTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGCTCAACACAACACAAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCTCAACACAACACAAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.519 | 0.511 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCTCAACACAACACAAAG&k=0&no_gap=0&offset=0&limit=50
1.116 | 0.597 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTGTGTTGTGTTGAGCTG&k=0&no_gap=0&offset=0&limit=35
1.124 | 0.008 | cgi_end;

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