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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 08:15:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Bos taurus genome assembly, chromosome: 13.
LR962743.1:16721686-16721705
AGAGTCGGACACGACTTAGATACAGAGCAT16721686CAGCTGCAAGGAAAAGAATAGAAAAGAAAGCAGGACTTTAAAACCTCGTA
Bos taurus genome assembly, chromosome: 13.
LR962868.1:16591038-16591057
AGAGTCGGACACGACTTAGATACAGAGCAT16591038CAGCTGCAAGGAAAAGAATAGAAAAGAAAGCAGGACTTTAAAACCTCGTA
Bos gaurus x Bos taurus genome assembly, chromosome: 13.
OX258967.1:17206400-17206419
AGAGTCGGACACGACTTAGATACAGAGCAT17206400CAGCTGCAAGGAAAAGAATAGAAAAGAAAGCAGGACTTTAAAACCTCGTA
Bos taurus strain mammals genome assembly, chromosome: 13.
OX344702.1:19879303-19879322
AGAGTCGGACACGACTTAGATACAGAGCAT19879303CAGCTGCAAGGAAAAGAATAGAAAAGAAAGCAGGACTTTAAAACCTCGTA
Rangifer tarandus platyrhyncus genome assembly, chromosome: 8.
OX596092.1:69559232-69559251
AGAGTCGGACACAACTTAGATACAGAGCAT69559232CAGCTGCAAGGAAAAGAATAGAAGACGAAGCAGGACTTAAAACCCTCACA
Bos taurus genome assembly, chromosome: Bta13.
OY997241.1:18285574-18285593
AGAGTCGGACACGACTTAGATACAGAGCAT18285574CAGCTGCAAGGAAAAGAATAGAAAAGAAAGCAGGACTTTAAAACCTCGTA
Bos taurus clone CH240-28L4, WORKING DRAFT SEQUENCE, 7 unordered pieces.
AC155769.3:115767-115786
AGAGTCGGACACGACTTAGATACAGAGCAT115767CAGCTGCAAGGAAAAGAATAGAAAAGAAAGCAGGACTTTAAAACCTCGTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022P06, complete sequence.
AC189268.2:103878-103897
AAACCTTTAGTTCTTCAAGGCCTTCAACAG103878CAGCTGCAAGGAAAAGAATAAAACAGACAAACACACATAAAAAAACTCTT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:2360174-2360193
AAACCTTTAGTTCTTCAAGGCCTTCAACAG2360174CAGCTGCAAGGAAAAGAATAAAACACACAAAACACACATAAAAAAACTCT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:1235333-1235352
AAACCTTTAGTTCTTCAAGGCCTTCAACAG1235333CAGCTGCAAGGAAAAGAATAAAACAGACAAACACACATAAAAAAACTCTT
Brassica rapa genome, scaffold: A06.
LR031569.1:1243306-1243325
TAGAATCAGAAACCTTTAGTTCTTCAACAG1243306CAGCTGCAAGGAAAAGAATAAAACAGACAAACACACATAAAAAAACTCTT
Brassica rapa genome, scaffold: A06.
LR031569.1:1244830-1244849
TAGAATCAGAAACCTTTAGTTCTTCAACAG1244830CAGCTGCAAGGAAAAGAATAAAACAGACAAACACACATAAAAAAACTCTT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:1336740-1336759
TAGAATCAGAAACCTTTAGTTCTTCAACAG1336740CAGCTGCAAGGAAAAGAATAAAACAGACAAACACACATAAAAAAACTCTT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:1338264-1338283
TAGAATCAGAAACCTTTAGTTCTTCAACAG1338264CAGCTGCAAGGAAAAGAATAAAACAGACAAACACACATAAAAAAACTCTT
Sthenelais limicola genome assembly, chromosome: 5.
OW804098.1:37207724-37207743
CCATTTTCAGCCTGCCCATTCTGACTTAAC37207724CAGCTGCAAGGAAAAGAATAAATACATTTAAAAATTGTTACACATAGAAT
Rangifer tarandus platyrhyncus genome assembly, chromosome: 11.
OX459947.2:11421884-11421903
TGTGAGGGTTTTAAGTCCTGCTTCGTCTTC11421884TATTCTTTTCCTTGCAGCTGATGCTCTGTATCTAAGTTGTGTCCGACTCT
Thalassophryne amazonica genome assembly, chromosome: 16.
LR722981.1:54960629-54960648
TTCAAGACCAATTGCAATTGAAATTTTGCT54960629TATTCTTTTCCTTGCAGCTGCTCCCTTTACTGGGTGCTACAGCAAGTCAT
BNQA_UP_139_B01_10NOV2005_013 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE555450.1:138-157
AAGAGTTTTTTTATGTGTGTTTGTCTGTTT138TATTCTTTTCCTTGCAGCTGCTGTTGAAGGCCTTGAAGAACTAAAGGTTT
KBrH073I19R KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis Brassica rapa subsp. pekinensis genomic clone KBrH073I19, genomic survey sequence.
DU983717.1:249-268
AAGAGTTTTTTTATGTGTGTTTGTCTGTTT249TATTCTTTTCCTTGCAGCTGCTGTTGAAGGCCTTGAAGAACTAAAGGTTT
KBrB129D02F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB129D02, genomic survey sequence.
ED536334.1:881-900
TAAGAGTTTTTTATGTGTGTTTGTCTGTTT881TATTCTTTTCCTTGCAGCTGCTGTTGAGGGTCTTGAGAACTAAAGGTTTC
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:11468096-11468115
AAGATTTTTTTTTGTGTGTTTTGTGTGTTT11468096TATTCTTTTCCTTGCAGCTGCTGTTGAAGGCCTTGAAGAACTAAAGGTTT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:11002683-11002702
AAGATTTTTTTTTGTGTGTTTTGTGTGTTT11002683TATTCTTTTCCTTGCAGCTGCTGTTGAAGGCCTTGAAGAACTAAAGGTTT
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:7796018-7796037
AAGATTTTTTTTTGTGTGTTTTGTGTGTTT7796018TATTCTTTTCCTTGCAGCTGCTGTTGAAGGCCTTGAAGAACTAAAGGTTT
Dyadobacter sp. NIV53 chromosome, complete genome.
CP081299.1:1654093-1654112
ACCCATGATGTTACAACAGATTATAGTGAT1654093TATTCTTTTCCTTGCAGCTGCCGGTTACATGGGGTGGAAATTATGGAAAT
Notodromas monacha.
OA883900.1:2630-2649
TTATATGGAGAGAGATCCTTCTCTACAAGG2630TATTCTTTTCCTTGCAGCTGTTCCCCTTTTGTTTTGGTTCCCCCTCTCTC
Luperina testacea genome assembly, chromosome: 29.
OV656784.1:9185091-9185110
TTTTGCCAACGACATGCTAAGAAGAATAAT9185091TATTCTTTTCCTTGCAGCTGAAAGACTATAGGTACTGCTTTCTGATAACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGCTGCAAGGAAAAGAATA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCTGCAAGGAAAAGAATA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.429 | 0.420 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCTGCAAGGAAAAGAATA&k=0&no_gap=0&offset=0&limit=50
0.673 | 0.245 | search_minus_done; http://172.18.8.135:50400/match?q=TATTCTTTTCCTTGCAGCTG&k=0&no_gap=0&offset=0&limit=35
0.681 | 0.008 | cgi_end;

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