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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 14:23:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

S2_P5G5_013_TRA_3897 Camellia assamica S2 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS398763.1:37-68
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA37CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
S5_P2F7_016_TRA_4477 Camellia assamica S5 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS399726.1:37-68
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA37CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
Tea203_2006-01-17_1/Tea203_D05_021_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK475596.1:562-593
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA562CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
TSA: Camellia sinensis tea_rep_c951 mRNA sequence.
KA280393.1:582-613
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA582CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
TSA: Camellia sinensis tea_rep_c2762 mRNA sequence.
KA282189.1:552-583
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA552CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
TSA: Camellia sinensis tea_rep_c24363 mRNA sequence.
KA302721.1:170-201
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA170CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
TSA: Camellia sinensis tea_rep_c24596 mRNA sequence.
KA302947.1:280-311
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA280CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
TSA: Camellia sinensis tea_s25772 mRNA sequence.
KA304063.1:179-210
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA179CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
Camellia sinensis var. assamica caffeine synthase (CkCS) mRNA, complete cds.
MN163829.1:441-472
GTCTTTCCATGGCCGGCTTTTTCCTCGTAA441CAGCTTACATTTAGTTTATTCCTCTTACAGTGTTCATTGGCTTACTCAGGCACCAAAAGGAC
TSA: Camellia sinensis tea_rep_c23168 mRNA sequence.
KA301596.1:60-91
GTCCTTTTGGTGCCTGAGTAAGCCAATGAA60CACTGTAAGAGGAATAAACTAAATGTAAGCTGTTACGAGGAAAAAGCCGGCCATGGAAAGAC
TSA: Camellia sinensis tea_s23638 mRNA sequence.
KA302032.1:59-90
GTCCTTTTGGTGCCTGAGTAAGCCAATGAA59CACTGTAAGAGGAATAAACTAAATGTAAGCTGTTACGAGGAAAAAGCCGGCCATGGAAAGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGCTTACATTTAGTTTATTCCTCTTACAGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCTTACATTTAGTTTATTCCTCTTACAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.418 | 0.409 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCTTACATTTAGTTTATTCCTCTTACAGTG&k=0&no_gap=0&offset=0&limit=50
0.466 | 0.048 | search_minus_done; http://172.18.8.135:50400/match?q=CACTGTAAGAGGAATAAACTAAATGTAAGCTG&k=0&no_gap=0&offset=0&limit=41
0.468 | 0.002 | cgi_end;

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