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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:25:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6942.
FX694573.1:830-849
GTGAACGTCATTGAGAGGATCTAGGGCAAT830CAGCTTATCTCTCAACTCTGTAAATGAAAGCTCGTTAATGTCTGGCTCCC
BONJK22TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONJK22, genomic survey sequence.
BZ463896.1:155-174
GTGAACGTCATTGAGAGGATCTAGGGCAAT155CAGCTTATCTCTCAACTCTGTAAATGAAAGCTCGTTAATGTCTGGCTCCC
BOIFF53TR BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFF53, genomic survey sequence.
CC955719.1:609-628
GTGAACGTCATTGAGAGGATCTAAGGCAAT609CAGCTTATCTCTCAACTCTGTAAAATGAAGCTCGTTAATGTCTGGCTCCC
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:12499437-12499456
GTGAACGTCATTGAGAGGATCTAGGGCAAT12499437CAGCTTATCTCTCAACTCTGTAAATGAAAGCTCGTTAATGTCTGGCTCCC
Brassica napus genome assembly, chromosome: A06.
HG994360.1:11102634-11102653
GTGAACGTCATTGAGAGGATCTAGGGCAAT11102634CAGCTTATCTCTCAACTCTGTAAATGAAAGCTCGTTAATGTCTGGCTCCC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:55129906-55129925
GTGAACGTCATTGAGAGGATCTAGGGCAAT55129906CAGCTTATCTCTCAACTCTGTAAATGAAAGCTCGTTAATGTCTGGCTCCC
Brassica rapa genome, scaffold: A06.
LR031569.1:10928052-10928071
GTGAACGTCATTGAGAGGATCTAGGGCAAT10928052CAGCTTATCTCTCAACTCTGTAAATGAAAGCTCGTTAATGTCTGGCTCCC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:55789774-55789793
GTGAACGTCATTGAGAGGATCTAGGGCAAT55789774CAGCTTATCTCTCAACTCTGTAAATGAAAGCTCGTTAATGTCTGGCTCCC
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:11776030-11776049
GTGAACGTCATTGAGAGGATCTAGGGCAAT11776030CAGCTTATCTCTCAACTCTGTAAATGAAAGCTCGTTAATGTCTGGCTCCC
Sequence 1 from Patent WO9850558.
A83277.1:1191-1210
GGGAGCCAGACATTAACGAGCTTTCATTTA1191CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
Sequence 12 from patent US 6469149.
AR241300.1:1191-1210
GGGAGCCAGACATTAACGAGCTTTCATTTA1191CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
Sequence 4 from patent US 6630330.
AR405966.1:1203-1222
GGGAGCCAGACATTAACGAGCTTTCATTTA1203CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
Sequence 4 from Patent WO0210425.
AX374951.1:1203-1222
GGGAGCCAGACATTAACGAGCTTTCATTTA1203CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
Sequence 4 from Patent EP1498489.
CS017718.1:1203-1222
GGGAGCCAGACATTAACGAGCTTTCATTTA1203CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
Sequence 4 from Patent EP1820863.
CS694163.1:1203-1222
GGGAGCCAGACATTAACGAGCTTTCATTTA1203CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
JP 2004504850-A/2: Ascorbic Acid Production from Yeasts.
DL070805.1:1203-1222
GGGAGCCAGACATTAACGAGCTTTCATTTA1203CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
Sequence 4 from patent US 7579171.
GP549735.1:1203-1222
GGGAGCCAGACATTAACGAGCTTTCATTTA1203CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
40JKME7D_UP_060_H01_17JUN2006_001 40JKME7D Brassica napus cDNA 5', mRNA sequence.
ES982422.1:206-225
GGGAGCCAGACATTAACGAGCTTTCATTTA206CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
0107546 Brassica napus Damaged cotyledons Brassica napus cDNA, mRNA sequence.
EV225620.1:227-246
GGGAGCCAGACATTAACGAGCTTTCATTTA227CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_14286.
FX728106.1:1226-1245
GGGAGCCAGACATTAACGAGCTTTCATTTA1226CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
TSA: Ctenomys sociabilis 94300.Ctso mRNA sequence.
JU520079.1:732-751
ATAATTGACAAAATTTACCTACATGTAAAC732CAGAGTTGAGAGATAAGCTGAATAATTTTTTTACATAATGTTAGCAGTGC
BOIFF53TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFF53, genomic survey sequence.
CC955707.1:535-554
GGGAGCCAGACATTAACGAGCTTTCATTTA535CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
KBrH099M06R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH099M06, genomic survey sequence.
DU124546.1:743-762
GGGAGCCAGACATTAACGAGCTTTCATTTA743CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
KBrH102B04R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH102B04, genomic survey sequence.
DU126235.1:653-672
GGGAGCCAGACATTAACGAGCTTTCATTTA653CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
Brassica rapa subsp. chinensis L-galactono-1,4-lactone dehydrogenase-like (GLDH) mRNA, complete sequence; nuclear gene for mitochondrial product.
AY899298.4:1176-1195
GGGAGCCAGACATTAACGAGCTTTCATTTA1176CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:19510279-19510298
GGGAGCCAGACATTAACGAGCTTTCATTTA19510279CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
Cardamine chenopodiifolia genome assembly, chromosome: 21.
OZ000479.1:11468052-11468071
GTGAGCCAGACATAAACGAGCTTTCATTTA11468052CAGAGTTGAGAGATAAGCTGCTTGCCCTTGATCCTCTCAATGACGTTCAT
Brassica oleracea mRNA for L-galactono-1,4-lactone dehydrogenase.
Z97060.1:1203-1222
GGGAGCCAGACATTAACGAGCTTTCATTTA1203CAGAGTTGAGAGATAAGCTGATTGCCCTAGATCCTCTCAATGACGTTCAC
Cheilosia impressa genome assembly, chromosome: X.
OX411885.1:2453322-2453341
TAGTTGTTGTCGTTCAGTAACATTTACCTG2453322CAGAGTTGAGAGATAAGCTGAACTTTTCTTTATCCTTATAATACATAATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGCTTATCTCTCAACTCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCTTATCTCTCAACTCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.136 | 0.128 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCTTATCTCTCAACTCTG&k=0&no_gap=0&offset=0&limit=50
0.395 | 0.259 | search_minus_done; http://172.18.8.135:50400/match?q=CAGAGTTGAGAGATAAGCTG&k=0&no_gap=0&offset=0&limit=41
0.408 | 0.013 | cgi_end;

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