GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 12:35:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Capsicum annuum MACs80_54924, mRNA sequence.
JW167909.1:1282-1301
CTTCAGATTTCTCCAACCTCTTCACTAGAC1282CAGCTTGTCGGCAGATCTGAGCTGCGATTTCATTATGAGGAAGACCGGCA
Solanum dulcamara genome assembly, chromosome: 12.
OX359263.1:14253616-14253635
TTTCAGATTTCTCCAACCTCTTCACCAAAC14253616CAGCTTGTCGGCAGATCTGAGCTGCGATTTCATTATGAGGAAGACCGGCA
Darwinula stevensoni.
LR899850.1:100089-100108
TTACACTCTTGTCAGGAAGCTTGACCAGGC100089CAGCTTGTCGGCAGATCTGAGCAGCAATATCATTATGAGGAAGGCCAGCA
Meles meles genome assembly, chromosome: 12.
OV277453.1:72146739-72146758
TGGGGGGTTTCACGCAGGAGAGTAACATGA72146739TCAGATCTGCCGACAAGCTGGGAAACGGCCTGGCGGGAGCGTGCATCTGC
Gallus gallus breed Huxu chromosome 4.
CP100558.1:55986792-55986811
AATCATATAAGGTGTAGTTCTGTGAGTTTA55986792TCAGATCTGCCGACAAGCTGTCCTGTGCTGGGAAGGGGCATACAGAATGC
EST249500 tomato ovary, TAMU Solanum lycopersicum cDNA clone cLED25N18, mRNA sequence.
AI483629.1:116-135
TGCTGGTCTTCCTCATAATGAAATTGCGGC116TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
EST244301 tomato ovary, TAMU Solanum lycopersicum cDNA clone cLED3H2, mRNA sequence.
AI485980.1:116-135
TGCTGGTCTTCCTCATAATGAAATTGCGGC116TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
EST245468 tomato ovary, TAMU Solanum lycopersicum cDNA clone cLED9C2, mRNA sequence.
AI487146.1:116-135
TGCTGGTCTTCCTCATAATGAAATTGCGGC116TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
EST245505 tomato ovary, TAMU Solanum lycopersicum cDNA clone cLED9M8, mRNA sequence.
AI487183.1:116-135
TGCTGGTCTTCCTCATAATGAAATTGCGGC116TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
EST247165 tomato ovary, TAMU Solanum lycopersicum cDNA clone cLED16C20, mRNA sequence.
AI488826.1:102-121
TGCTGGTCTTCCTCATAATGAAATTGCGGC102TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
EST339894 tomato flower buds, anthesis, Cornell University Solanum lycopersicum cDNA clone cTOD7M4 5', mRNA sequence.
AW738467.1:517-536
TGCTGGTCTTCCTCATAATGAAATTGCGGC517TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
EST394536 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA14P14 similar to vacuolar H+-ATPase B subunit {Nicotiana tabacum}, mRNA sequence.
BE341705.1:514-533
TGCCGGTCTTCCTCATAATGAAATTGCGGC514TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
EST399262 tomato breaker fruit, TIGR Solanum lycopersicum cDNA clone cLEG10G1, mRNA sequence.
BE432733.1:169-188
TGCTGGTCTTCCTCATAATGAAATTGCGGC169TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
182C06 Mature tuber lambda ZAP Solanum tuberosum cDNA, mRNA sequence.
BI406854.1:183-202
TGCCGGTCTTCCTCATAATGAAATTGCGGC183TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
EST549415 tomato flower, 3 - 8 mm buds Solanum lycopersicum cDNA clone cTOB29O13 5' end, mRNA sequence.
BI929526.1:278-297
TGCTGGTCTTCCTCATAATGAAATTGCGGC278TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
EST560344 potato roots Solanum tuberosum cDNA clone cPRO15N24 5' end, mRNA sequence.
BM112808.1:571-590
TGCCGGTCTTCCTCATAATGAAATTGCGGC571TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Solanum lycopersicum cDNA, clone: FA14DB06, 5' end, expressed in maturing fruit.
BP879467.1:413-432
TGCTGGTCTTCCTCATAATGAAATTGCGGC413TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
EST594858 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI12B16 5' end, mRNA sequence.
BQ045740.1:526-545
TGCCGGTCTTCCTCATAATGAAATTGCGGC526TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
EST722087 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADQ85 5' end, mRNA sequence.
CK276009.1:671-690
TGCCGGTCTTCCTCATAATGAAATTGCGGC671TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
55857.1 After-Cooking Darkening C Solanum tuberosum cDNA clone 55857 5', mRNA sequence.
CV431524.1:150-169
TGCCGGTCTTCCTCATAATGAAATTGCGGC150TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Solanum lycopersicum cDNA, clone: LEFL1036AD08, 5' end, expressed in leaf.
DB689439.1:194-213
TGCTGGTCTTCCTCATAATGAAATTGCGGC194TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
13756.2 Stolon Solanum tuberosum cDNA clone 13756 5', mRNA sequence.
DN849616.1:573-592
TGCCGGTCTTCCTCATAATGAAATTGCGGC573TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
93857.1 Cold Sweetening C Solanum tuberosum cDNA clone 93857 5', mRNA sequence.
DV624337.1:595-614
GCCGGGTCTTCCTCATAATGAAATTGCGGC595TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
KS21033C12 KS21 Capsicum annuum cDNA, mRNA sequence.
GD102155.1:611-630
TGCCGGTCTTCCTCATAATGAAATCGCAGC611TCAGATCTGCCGACAAGCTGGTCTAGTGAAGAGGTTGGAGAAATCT
ctsc5l7 Tomato Seed Library [C] Solanum lycopersicum cDNA clone cTSC-5-L7 5', mRNA sequence.
GO375115.1:575-594
TGCTGGTCTTCCTCATAATGAAATTGCGGC575TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
TSA: Capsicum annuum MGMT_Contig45704 mRNA sequence.
JW095948.1:1186-1205
TGCCGGTCTTCCTCATAATGAAATCGCAGC1186TCAGATCTGCCGACAAGCTGGTCTAGTGAAGAGGTTGGAGAAATCTGAAG
Solanum lycopersicum cDNA, clone: LEFL1014CF06, HTC in leaf.
AK320925.1:685-704
TGCTGGTCTTCCTCATAATGAAATTGCGGC685TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:137446490-137446509
TGCCGGTCTTCCTCATAATGAAATCGCAGC137446490TCAGATCTGCCGACAAGCTGGTCTAGTGAAGAGGTTGGAGAAATCTGAAG
Solanum lycopersicum Micro-Tom DNA, chromosome 10, draft genome sequence.
AP028944.1:55766117-55766136
TGCTGGTCTTCCTCATAATGAAATTGCGGC55766117TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Solanum lycopersicum cultivar I-3 chromosome 10.
CP023766.1:57181583-57181602
TGCTGGTCTTCCTCATAATGAAATTGCGGC57181583TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Solanum tuberosum cultivar P8 chromosome 10.
CP046683.1:47483084-47483103
TGCYGGTCTTCCTCATAATGAAATTGCRGC47483084TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Solanum tuberosum cultivar MSH/14-112 chromosome 10.
CP046694.1:47482921-47482940
TGCYGGTCTTCCTCATAATGAAATTGCRGC47482921TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Solanum pinnatisectum cultivar CGN17745 chromosome 10.
CP047557.1:47475745-47475764
TGCTGGTCTTCCTCATAATGAAATTGCAGC47475745TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Solanum tuberosum cultivar Solyntus chromosome 10.
CP055243.1:35975449-35975468
TGCCGGTCTTCCTCATAATGAAATTGCGGC35975449TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:144158250-144158269
TGCCGGTCTTCCTCATAATGAAATCGCAGC144158250TCAGATCTGCCGACAAGCTGGTCTAGTGAAGAGGTTGGAGAAATCTGAAG
Solanum verrucosum cultivar 11H23 chromosome 10.
CP133621.1:45590729-45590748
TGCCGGTCTTCCTCATAATGAAATTGCGGC45590729TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Solanum pennellii chromosome ch10, complete genome.
HG975449.1:68120564-68120583
TGCTGGTCTTCCTCATAATGAAATTGCGGC68120564TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Solanum lycopersicum chromosome ch10, complete genome.
HG975522.1:52655498-52655517
TGCTGGTCTTCCTCATAATGAAATTGCGGC52655498TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA
Solanum lycopersicum genome assembly, chromosome: 10.
OU640353.1:57635793-57635812
TGCTGGTCTTCCTCATAATGAAATTGCGGC57635793TCAGATCTGCCGACAAGCTGGTTTAGTGAAGAGGTTGGAGAAATCTGAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGCTTGTCGGCAGATCTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCTTGTCGGCAGATCTGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.139 | 0.131 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCTTGTCGGCAGATCTGA&k=0&no_gap=0&offset=0&limit=50
0.603 | 0.464 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGATCTGCCGACAAGCTG&k=0&no_gap=0&offset=0&limit=47
0.626 | 0.023 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).