GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:08:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES15C20, 5' end sequence.
FY387839.1:734-753
ACATGGCCGCGCATCTTCTTGAAATGTGAG734CAGGAACGTCGACTACGACAACAACAGATTGTTGTTGTTGTTGCTTTGGA
Dianthus caryophyllus mRNA, clone: CES08B19, 5' end sequence.
FY385166.1:167-186
AATACTTCCAAAGCAACAACAATCTGTTGT167TGTCGTAGTCGACGTTCCTGCTCACATTTCAAGAAGATGCGCGGCCATGT
Dianthus caryophyllus mRNA, clone: CES23E05, 5' end sequence.
FY390882.1:173-192
TCCAAAGCAACAACAACAACAATCTGTTGT173TGTCGTAGTCGACGTTCCTGCTCACATTTCAAGAAGATGCGCGGCCATGT
TSA: Dianthus caryophyllus mRNA, contig: CAK09.715.C1.
FX298016.1:166-185
AATACTTCCAAAGCAACAACAATCTGTTGT166TGTCGTAGTCGACGTTCCTGCTCACATTTCAAGAAGATGCGCGGCCATGT
TSA: Dianthus caryophyllus mRNA, contig: CAK09.715.C2.
FX298017.1:173-192
TCCAAAGCAACAACAACAACAATCTGTTGT173TGTCGTAGTCGACGTTCCTGCTCACATTTCAAGAAGATGCGCGGCCATGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGGAACGTCGACTACGACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGAACGTCGACTACGACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.162 | 0.154 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGAACGTCGACTACGACA&k=0&no_gap=0&offset=0&limit=50
0.344 | 0.181 | search_minus_done; http://172.18.8.135:50400/match?q=TGTCGTAGTCGACGTTCCTG&k=0&no_gap=0&offset=0&limit=49
0.346 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).